Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MIR133B-201ENST00000362210 119 ntBASIC9.66□□□□□ -0.86
CUX1P39880 SNORA56-201ENST00000383966 129 ntBASIC9.66□□□□□ -0.86
CUX1P39880 RPA2P2-201ENST00000419698 796 ntBASIC9.66□□□□□ -0.86
CUX1P39880 AL590762.4-201ENST00000425885 253 ntBASIC9.66□□□□□ -0.86
CUX1P39880 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC9.66□□□□□ -0.86
CUX1P39880 FABP7P2-201ENST00000429946 379 ntBASIC9.66□□□□□ -0.86
CUX1P39880 RPL7P61-201ENST00000451721 751 ntBASIC9.66□□□□□ -0.86
CUX1P39880 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC9.66□□□□□ -0.86
CUX1P39880 AC068522.1-201ENST00000482895 345 ntBASIC9.66□□□□□ -0.86
CUX1P39880 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC9.66□□□□□ -0.86
CUX1P39880 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC9.66□□□□□ -0.86
CUX1P39880 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC9.66□□□□□ -0.86
CUX1P39880 AC004825.1-201ENST00000555068 586 ntBASIC9.66□□□□□ -0.86
CUX1P39880 AC104066.2-201ENST00000564513 1741 ntTSL 3 BASIC9.66□□□□□ -0.86
CUX1P39880 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC9.66□□□□□ -0.86
CUX1P39880 AC090510.2-201ENST00000617465 629 ntBASIC9.66□□□□□ -0.86
CUX1P39880 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
CUX1P39880 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC9.66□□□□□ -0.86
CUX1P39880 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
CUX1P39880 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC9.66□□□□□ -0.86
CUX1P39880 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC9.66□□□□□ -0.86
CUX1P39880 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
CUX1P39880 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC9.66□□□□□ -0.86
CUX1P39880 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
CUX1P39880 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC9.66□□□□□ -0.86
CUX1P39880 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC9.66□□□□□ -0.86
CUX1P39880 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC9.66□□□□□ -0.86
CUX1P39880 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
CUX1P39880 RN7SKP115-201ENST00000363177 317 ntBASIC9.66□□□□□ -0.86
CUX1P39880 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
CUX1P39880 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
CUX1P39880 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
CUX1P39880 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC9.66□□□□□ -0.86
CUX1P39880 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC9.66□□□□□ -0.86
CUX1P39880 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC9.66□□□□□ -0.86
CUX1P39880 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC9.66□□□□□ -0.86
CUX1P39880 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
CUX1P39880 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC9.65□□□□□ -0.86
CUX1P39880 AC008957.3-201ENST00000624112 2242 ntBASIC9.65□□□□□ -0.86
CUX1P39880 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC9.65□□□□□ -0.86
CUX1P39880 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC9.65□□□□□ -0.86
CUX1P39880 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC9.65□□□□□ -0.86
CUX1P39880 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
CUX1P39880 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.86
CUX1P39880 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
CUX1P39880 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
CUX1P39880 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC9.65□□□□□ -0.86
CUX1P39880 RBMY2KP-201ENST00000418221 992 ntBASIC9.65□□□□□ -0.86
CUX1P39880 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC9.65□□□□□ -0.86
CUX1P39880 AC026254.2-201ENST00000475295 371 ntBASIC9.65□□□□□ -0.86
CUX1P39880 AC092593.2-201ENST00000513866 913 ntBASIC9.65□□□□□ -0.86
CUX1P39880 CYP4F27P-201ENST00000514557 494 ntBASIC9.65□□□□□ -0.86
CUX1P39880 CDH12P4-201ENST00000517835 295 ntBASIC9.65□□□□□ -0.86
CUX1P39880 CDH12P3-201ENST00000517935 295 ntBASIC9.65□□□□□ -0.86
CUX1P39880 CDH12P1-201ENST00000518435 295 ntBASIC9.65□□□□□ -0.86
CUX1P39880 AC126615.2-201ENST00000553003 515 ntBASIC9.65□□□□□ -0.86
CUX1P39880 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC9.65□□□□□ -0.86
CUX1P39880 AC020765.1-201ENST00000604296 328 ntBASIC9.65□□□□□ -0.86
CUX1P39880 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC9.65□□□□□ -0.86
CUX1P39880 AC132068.1-201ENST00000623805 459 ntBASIC9.65□□□□□ -0.86
CUX1P39880 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
CUX1P39880 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
CUX1P39880 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC9.64□□□□□ -0.87
CUX1P39880 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC9.64□□□□□ -0.87
CUX1P39880 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
CUX1P39880 RNA5SP319-201ENST00000362768 119 ntBASIC9.64□□□□□ -0.87
CUX1P39880 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC9.64□□□□□ -0.87
CUX1P39880 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC9.64□□□□□ -0.87
CUX1P39880 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC9.64□□□□□ -0.87
CUX1P39880 RPL15P21-201ENST00000495592 567 ntBASIC9.64□□□□□ -0.87
CUX1P39880 AC105384.2-201ENST00000508433 640 ntBASIC9.64□□□□□ -0.87
CUX1P39880 MIR4436B2-201ENST00000581415 91 ntBASIC9.64□□□□□ -0.87
CUX1P39880 MIR4436B1-201ENST00000583272 91 ntBASIC9.64□□□□□ -0.87
CUX1P39880 AL121612.2-201ENST00000612261 482 ntBASIC9.64□□□□□ -0.87
CUX1P39880 AC025574.2-201ENST00000615621 514 ntBASIC9.64□□□□□ -0.87
CUX1P39880 CCL14-204ENST00000622526 472 ntTSL 3 BASIC9.64□□□□□ -0.87
CUX1P39880 AC008124.1-201ENST00000609803 9730 ntBASIC9.64□□□□□ -0.87
CUX1P39880 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
CUX1P39880 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC9.64□□□□□ -0.87
CUX1P39880 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
CUX1P39880 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
CUX1P39880 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC9.63□□□□□ -0.87
CUX1P39880 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
CUX1P39880 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
CUX1P39880 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC9.63□□□□□ -0.87
CUX1P39880 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC9.63□□□□□ -0.87
CUX1P39880 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
CUX1P39880 RNA5SP333-201ENST00000363466 118 ntBASIC9.63□□□□□ -0.87
CUX1P39880 RNA5SP334-201ENST00000364825 118 ntBASIC9.63□□□□□ -0.87
CUX1P39880 RN7SKP213-201ENST00000410746 298 ntBASIC9.63□□□□□ -0.87
CUX1P39880 RPS6P23-201ENST00000413224 722 ntBASIC9.63□□□□□ -0.87
CUX1P39880 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC9.63□□□□□ -0.87
CUX1P39880 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC9.63□□□□□ -0.87
CUX1P39880 AC079922.1-201ENST00000443291 359 ntBASIC9.63□□□□□ -0.87
CUX1P39880 RN7SL352P-201ENST00000466002 277 ntBASIC9.63□□□□□ -0.87
CUX1P39880 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC9.63□□□□□ -0.87
CUX1P39880 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC9.63□□□□□ -0.87
CUX1P39880 AL049779.2-201ENST00000553847 315 ntBASIC9.63□□□□□ -0.87
CUX1P39880 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC9.63□□□□□ -0.87
CUX1P39880 MIR3691-201ENST00000578066 90 ntBASIC9.63□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 138.6 ms