Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXA9P31269 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXA9P31269 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXA9P31269 GAPDHP48-201ENST00000436626 961 ntBASIC6.31□□□□□ -1.4
HOXA9P31269 NPM1P19-201ENST00000450070 712 ntBASIC6.31□□□□□ -1.4
HOXA9P31269 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXA9P31269 NENFP3-201ENST00000503735 313 ntBASIC6.31□□□□□ -1.4
HOXA9P31269 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXA9P31269 KCTD9P4-201ENST00000526766 1166 ntBASIC6.31□□□□□ -1.4
HOXA9P31269 AC006530.1-201ENST00000555980 571 ntBASIC6.31□□□□□ -1.4
HOXA9P31269 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC6.31□□□□□ -1.4
HOXA9P31269 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
HOXA9P31269 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXA9P31269 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXA9P31269 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXA9P31269 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXA9P31269 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXA9P31269 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
HOXA9P31269 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXA9P31269 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXA9P31269 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.4
HOXA9P31269 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
HOXA9P31269 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
HOXA9P31269 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
HOXA9P31269 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.3□□□□□ -1.4
HOXA9P31269 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HOXA9P31269 AC137056.2-201ENST00000624055 1958 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXA9P31269 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.3□□□□□ -1.4
HOXA9P31269 AC016769.2-201ENST00000414815 475 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXA9P31269 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXA9P31269 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC6.3□□□□□ -1.4
HOXA9P31269 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXA9P31269 YWHAEP1-201ENST00000453697 763 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 RN7SL57P-201ENST00000493687 290 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 GAPDHP71-201ENST00000511530 1003 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 HMGN2P36-201ENST00000529541 409 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXA9P31269 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXA9P31269 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXA9P31269 AC018558.5-201ENST00000565840 952 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 AC119403.2-201ENST00000590960 598 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.3□□□□□ -1.4
HOXA9P31269 AC011497.2-201ENST00000600255 639 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 AL049840.6-201ENST00000604583 345 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.3□□□□□ -1.4
HOXA9P31269 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC6.3□□□□□ -1.4
HOXA9P31269 AC003992.1-201ENST00000635364 557 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.3□□□□□ -1.4
HOXA9P31269 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC6.3□□□□□ -1.4
HOXA9P31269 OFD1P17-201ENST00000437639 3018 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
HOXA9P31269 AC123769.1-201ENST00000530992 3192 ntBASIC6.3□□□□□ -1.4
HOXA9P31269 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.3□□□□□ -1.4
HOXA9P31269 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HOXA9P31269 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXA9P31269 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXA9P31269 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.29□□□□□ -1.4
HOXA9P31269 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXA9P31269 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
HOXA9P31269 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
HOXA9P31269 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXA9P31269 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
HOXA9P31269 RNA5SP375-201ENST00000362975 119 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXA9P31269 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.29□□□□□ -1.4
HOXA9P31269 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.29□□□□□ -1.4
HOXA9P31269 NMD3P2-201ENST00000421815 761 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC6.29□□□□□ -1.4
HOXA9P31269 LYPLA1P1-201ENST00000434514 622 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 AL445928.1-201ENST00000435545 222 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 RPS27AP3-201ENST00000453803 454 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 SETP4-201ENST00000455717 868 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC6.29□□□□□ -1.4
HOXA9P31269 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC6.29□□□□□ -1.4
HOXA9P31269 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC6.29□□□□□ -1.4
HOXA9P31269 RNU4ATAC-201ENST00000580972 127 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 NPM1P45-201ENST00000583151 559 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 FAM27E4-201ENST00000605259 342 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 AL021918.2-201ENST00000613415 194 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 AL157762.1-201ENST00000619612 415 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 AC011369.2-201ENST00000624423 1567 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
HOXA9P31269 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 LCOR-201ENST00000286067 4542 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms