Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
HOXC4P09017 AC007114.2-201ENST00000576014 4281 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC4P09017 TMSB4XP2-201ENST00000335179 210 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.89□□□□□ -1.47
HOXC4P09017 RNA5SP122-201ENST00000384457 108 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 AC092642.1-201ENST00000392417 425 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 AL031985.1-201ENST00000392713 418 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 SNRPEP6-201ENST00000407465 277 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXC4P09017 RPS14P4-201ENST00000415880 418 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXC4P09017 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXC4P09017 MTND6P12-201ENST00000428247 522 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXC4P09017 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXC4P09017 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXC4P09017 AL445665.1-202ENST00000452436 324 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 SDC4P-201ENST00000453285 601 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 NXT1P1-201ENST00000458481 316 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 RPL7P51-201ENST00000490532 749 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 RPL17P2-201ENST00000491913 451 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 AC008629.2-201ENST00000503783 483 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 GAPDHP71-201ENST00000511530 1003 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 SNORD46.2-201ENST00000516021 102 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 IGKV3D-34-201ENST00000522638 302 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXC4P09017 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXC4P09017 AC006530.1-201ENST00000555980 571 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXC4P09017 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
HOXC4P09017 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXC4P09017 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXC4P09017 ZNF969P-201ENST00000510345 2341 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC4P09017 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC4P09017 THAP12P9-201ENST00000503971 2360 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC4P09017 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC4P09017 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
HOXC4P09017 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.89□□□□□ -1.47
HOXC4P09017 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC4P09017 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC4P09017 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXC4P09017 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXC4P09017 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC4P09017 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC4P09017 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.89□□□□□ -1.47
HOXC4P09017 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC4P09017 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC4P09017 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 AC009779.8-201ENST00000641684 4384 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXC4P09017 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
HOXC4P09017 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXC4P09017 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 RNA5SP510-201ENST00000364697 99 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 RNA5SP211-201ENST00000365516 117 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 RN7SKP269-201ENST00000365545 319 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 RNA5SP284-201ENST00000384547 118 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 RPS17P17-201ENST00000419392 409 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 AC099677.3-201ENST00000427081 395 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.88□□□□□ -1.47
HOXC4P09017 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.88□□□□□ -1.47
HOXC4P09017 PCBP2P1-201ENST00000437262 977 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.88□□□□□ -1.47
HOXC4P09017 H3F3BP1-201ENST00000440551 403 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.88□□□□□ -1.47
HOXC4P09017 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXC4P09017 PPIAP19-201ENST00000486414 492 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXC4P09017 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.88□□□□□ -1.47
HOXC4P09017 AC008429.4-201ENST00000521201 182 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 IGKV2-4-201ENST00000523070 340 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXC4P09017 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXC4P09017 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC5.88□□□□□ -1.47
HOXC4P09017 AC091078.2-201ENST00000557145 559 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.88□□□□□ -1.47
HOXC4P09017 AC083837.1-201ENST00000565297 2994 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXC4P09017 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 AL357153.4-201ENST00000620487 1016 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 AP001885.1-201ENST00000621658 558 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXC4P09017 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXC4P09017 OR8G3P-202ENST00000641572 1255 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC4P09017 PDZK1P1-202ENST00000425209 1350 ntBASIC5.88□□□□□ -1.47
HOXC4P09017 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms