Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXD4P09016 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXD4P09016 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXD4P09016 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXD4P09016 AL391987.1-201ENST00000441025 200 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 HIGD1AP16-201ENST00000450986 258 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 AC023194.2-201ENST00000465398 406 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 SNORA58-201ENST00000505219 137 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 SCARNA21.2-201ENST00000516600 166 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 RN7SKP35-201ENST00000517210 151 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXD4P09016 AP003396.4-201ENST00000527574 265 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXD4P09016 AP005136.2-201ENST00000583253 1049 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 AC008521.2-201ENST00000591021 259 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXD4P09016 AC097467.4-201ENST00000605504 141 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 AC016252.1-201ENST00000609721 474 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 AC010998.3-201ENST00000613871 631 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 RNA5SP439-201ENST00000617595 124 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXD4P09016 SAMM50P1-201ENST00000455403 1399 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXD4P09016 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXD4P09016 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXD4P09016 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXD4P09016 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXD4P09016 FAM32BP-201ENST00000344033 333 ntBASIC5.63□□□□□ -1.51
HOXD4P09016 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXD4P09016 AL512422.1-201ENST00000407033 553 ntBASIC5.63□□□□□ -1.51
HOXD4P09016 OR3D1P-201ENST00000438288 955 ntBASIC5.63□□□□□ -1.51
HOXD4P09016 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC5.63□□□□□ -1.51
HOXD4P09016 AC022415.1-202ENST00000486612 523 ntBASIC5.63□□□□□ -1.51
HOXD4P09016 RN7SL101P-201ENST00000496350 279 ntBASIC5.63□□□□□ -1.51
HOXD4P09016 AC098799.1-201ENST00000504752 800 ntBASIC5.63□□□□□ -1.51
HOXD4P09016 OR7E99P-201ENST00000505750 922 ntBASIC5.63□□□□□ -1.51
HOXD4P09016 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXD4P09016 AC106872.4-201ENST00000510050 523 ntBASIC5.63□□□□□ -1.51
HOXD4P09016 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXD4P09016 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXD4P09016 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXD4P09016 MRPS21P8-201ENST00000569196 235 ntBASIC5.63□□□□□ -1.51
HOXD4P09016 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXD4P09016 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXD4P09016 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXD4P09016 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXD4P09016 AL357153.4-201ENST00000620487 1016 ntBASIC5.63□□□□□ -1.51
HOXD4P09016 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXD4P09016 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXD4P09016 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXD4P09016 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXD4P09016 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
HOXD4P09016 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXD4P09016 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXD4P09016 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXD4P09016 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.63□□□□□ -1.51
HOXD4P09016 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXD4P09016 CASC19-238ENST00000641523 1558 ntBASIC5.63□□□□□ -1.51
HOXD4P09016 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.63□□□□□ -1.51
HOXD4P09016 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXD4P09016 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
HOXD4P09016 AC015689.2-201ENST00000528172 1738 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXD4P09016 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXD4P09016 AC105235.1-201ENST00000623208 1816 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXD4P09016 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXD4P09016 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXD4P09016 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXD4P09016 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
HOXD4P09016 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXD4P09016 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
HOXD4P09016 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXD4P09016 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
HOXD4P09016 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXD4P09016 RN7SKP77-201ENST00000363261 353 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 RNA5SP346-201ENST00000363541 121 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 RN7SKP81-201ENST00000365603 331 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 SNORA51.9-201ENST00000384295 124 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 131.1 ms