Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 TPT1-204ENST00000379060 764 ntTSL 5 BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 AC009804.1-201ENST00000400949 179 ntBASIC8.93□□□□□ -0.98
SCAPERQ9BY12 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 RPA2P2-201ENST00000419698 796 ntBASIC8.93□□□□□ -0.98
SCAPERQ9BY12 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 AC026254.2-201ENST00000475295 371 ntBASIC8.93□□□□□ -0.98
SCAPERQ9BY12 OARD1-211ENST00000480585 829 ntTSL 3 BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 EIF1P7-201ENST00000487533 337 ntBASIC8.93□□□□□ -0.98
SCAPERQ9BY12 AC009120.1-201ENST00000493458 473 ntBASIC8.93□□□□□ -0.98
SCAPERQ9BY12 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 CDC42P3-201ENST00000518493 633 ntBASIC8.93□□□□□ -0.98
SCAPERQ9BY12 FCF1-203ENST00000553615 954 ntTSL 3 BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 MIR6837-201ENST00000620884 64 ntBASIC8.93□□□□□ -0.98
SCAPERQ9BY12 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 AL139805.2-201ENST00000455305 2433 ntBASIC8.93□□□□□ -0.98
SCAPERQ9BY12 AC127070.3-201ENST00000503695 3263 ntBASIC8.93□□□□□ -0.98
SCAPERQ9BY12 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 EIF4A1P7-201ENST00000421800 1220 ntBASIC8.92□□□□□ -0.98
SCAPERQ9BY12 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 RPL35AP28-201ENST00000459730 331 ntBASIC8.92□□□□□ -0.98
SCAPERQ9BY12 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 OR7E158P-201ENST00000524483 910 ntBASIC8.92□□□□□ -0.98
SCAPERQ9BY12 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AC096996.1-201ENST00000563813 325 ntBASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AC015720.2-201ENST00000567709 334 ntBASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AC145423.1-201ENST00000605712 336 ntBASIC8.92□□□□□ -0.98
SCAPERQ9BY12 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AC003992.1-201ENST00000635364 557 ntBASIC8.92□□□□□ -0.98
SCAPERQ9BY12 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC8.92□□□□□ -0.98
SCAPERQ9BY12 AC079753.1-201ENST00000623243 3868 ntBASIC8.91□□□□□ -0.98
SCAPERQ9BY12 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 AC011742.2-201ENST00000443818 352 ntBASIC8.91□□□□□ -0.98
SCAPERQ9BY12 SDC4P-201ENST00000453285 601 ntBASIC8.91□□□□□ -0.98
SCAPERQ9BY12 RPS4XP1-201ENST00000482189 787 ntBASIC8.91□□□□□ -0.98
SCAPERQ9BY12 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 RN7SL708P-201ENST00000580952 299 ntBASIC8.91□□□□□ -0.98
SCAPERQ9BY12 uc_338.26-201ENST00000612659 160 ntBASIC8.91□□□□□ -0.98
SCAPERQ9BY12 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 AFP-201ENST00000226359 1914 ntTSL 5 BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
SCAPERQ9BY12 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 RNA5SP211-201ENST00000365516 117 ntBASIC8.9□□□□□ -0.98
SCAPERQ9BY12 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC8.9□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms