Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC023141.3-201ENST00000436698 278 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 RPL37P23-201ENST00000492641 294 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 CYP4F27P-201ENST00000514557 494 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 RN7SKP35-201ENST00000517210 151 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 IGKV3D-25-201ENST00000519599 235 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 FAU-203ENST00000525297 355 ntTSL 5 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 HMGN2P47-201ENST00000559378 272 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 AL136097.3-201ENST00000611097 505 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 RN7SL261P-201ENST00000613441 282 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 AL731532.1-201ENST00000623972 4236 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 RBMY1HP-201ENST00000382759 1389 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 AL132875.1-201ENST00000403623 949 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 RN7SKP151-201ENST00000410230 316 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC245096.1-201ENST00000413104 546 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 RPL12P12-201ENST00000424633 501 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 AL353662.1-201ENST00000439099 327 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 FTLP8-201ENST00000446770 267 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 RAB28P2-201ENST00000454299 641 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC112187.1-201ENST00000455837 479 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC090651.1-201ENST00000567865 634 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 RNU4ATAC-201ENST00000580972 127 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC068768.2-201ENST00000602352 343 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC073333.2-201ENST00000603589 769 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 AL645933.2-201ENST00000606743 1207 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC092266.1-201ENST00000610958 165 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC004801.6-201ENST00000616571 978 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 AC096861.1-201ENST00000616652 240 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 UGT2B24P-201ENST00000514441 1597 ntBASIC6.05□□□□□ -1.44
VPS35Q96QK1 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS35Q96QK1 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS35Q96QK1 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS35Q96QK1 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS35Q96QK1 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS35Q96QK1 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS35Q96QK1 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS35Q96QK1 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 AL096829.1-201ENST00000413677 457 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 AC021876.1-201ENST00000425959 359 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms