Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RPL23AP34-201ENST00000423483 410 ntBASIC7.37□□□□□ -1.23
MSX1P28360 OR4F2P-201ENST00000424047 938 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AC126124.1-201ENST00000426104 185 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AC104076.1-201ENST00000428080 265 ntTSL 3 BASIC7.37□□□□□ -1.23
MSX1P28360 Z98752.2-201ENST00000432727 312 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AC016734.1-201ENST00000436998 654 ntBASIC7.37□□□□□ -1.23
MSX1P28360 MIATNB-204ENST00000437071 1006 ntTSL 3 BASIC7.37□□□□□ -1.23
MSX1P28360 AL359502.1-201ENST00000437334 692 ntTSL 3 BASIC7.37□□□□□ -1.23
MSX1P28360 DNAJA1P6-201ENST00000437347 354 ntBASIC7.37□□□□□ -1.23
MSX1P28360 RPL39P6-201ENST00000448289 150 ntBASIC7.37□□□□□ -1.23
MSX1P28360 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC7.37□□□□□ -1.23
MSX1P28360 AL391361.2-202ENST00000454826 439 ntTSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 SNRPFP4-201ENST00000456366 242 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AP000797.1-201ENST00000478870 387 ntBASIC7.37□□□□□ -1.23
MSX1P28360 CC2D2A-205ENST00000503658 605 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC7.37□□□□□ -1.23
MSX1P28360 AC108078.1-201ENST00000508073 725 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC7.37□□□□□ -1.23
MSX1P28360 ENPP7P3-201ENST00000509123 241 ntBASIC7.37□□□□□ -1.23
MSX1P28360 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 RNU6-327P-201ENST00000516270 127 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 AF279873.3-204ENST00000523336 784 ntTSL 2 BASIC7.37□□□□□ -1.23
MSX1P28360 AF235103.2-201ENST00000525753 346 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AC087280.1-201ENST00000530632 1003 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AL157687.1-201ENST00000554853 619 ntBASIC7.37□□□□□ -1.23
MSX1P28360 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 AC015722.1-201ENST00000557499 385 ntTSL 3 BASIC7.37□□□□□ -1.23
MSX1P28360 AL157394.1-201ENST00000562983 1224 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AC087565.1-201ENST00000565061 391 ntTSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 MIR3913-1-201ENST00000577744 102 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC7.37□□□□□ -1.23
MSX1P28360 MIR4682-201ENST00000580643 80 ntBASIC7.37□□□□□ -1.23
MSX1P28360 SLC14A1-214ENST00000589700 1022 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC7.37□□□□□ -1.23
MSX1P28360 AC093063.1-201ENST00000599317 363 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 YTHDF2P1-201ENST00000604759 1271 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AL359535.1-201ENST00000612100 1087 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AC087742.2-201ENST00000616113 740 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AL139089.1-201ENST00000620372 975 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AC079684.1-201ENST00000621405 437 ntBASIC7.37□□□□□ -1.23
MSX1P28360 AL034408.1-201ENST00000637712 664 ntBASIC7.37□□□□□ -1.23
MSX1P28360 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
MSX1P28360 RN7SKP23-201ENST00000625159 4301 ntBASIC7.37□□□□□ -1.23
MSX1P28360 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 CDK15-202ENST00000410091 1780 ntAPPRIS P3 TSL 2 BASIC7.37□□□□□ -1.23
MSX1P28360 ENO1P4-201ENST00000416471 1785 ntBASIC7.37□□□□□ -1.23
MSX1P28360 CD101-201ENST00000256652 3283 ntAPPRIS P1 TSL 2 BASIC7.37□□□□□ -1.23
MSX1P28360 AOX2P-204ENST00000487742 3284 ntBASIC7.37□□□□□ -1.23
MSX1P28360 BDNF-206ENST00000395983 3776 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 MAP3K7CL-201ENST00000286791 1725 ntTSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 GPX6-204ENST00000612264 1709 ntAPPRIS ALT1 TSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 PHF21A-201ENST00000323180 3675 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 GJA10-201ENST00000369352 1652 ntAPPRIS P2 BASIC7.37□□□□□ -1.23
MSX1P28360 RAD51B-211ENST00000487861 1673 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 CTAGE15-201ENST00000420911 2587 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
MSX1P28360 AL109918.1-201ENST00000602367 3039 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 CU633967.1-204ENST00000624627 1604 ntTSL 2 BASIC7.37□□□□□ -1.23
MSX1P28360 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC7.37□□□□□ -1.23
MSX1P28360 CORIN-205ENST00000504584 2417 ntTSL 2 BASIC7.37□□□□□ -1.23
MSX1P28360 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC7.37□□□□□ -1.23
MSX1P28360 KIF6-208ENST00000538893 2386 ntTSL 5 BASIC7.37□□□□□ -1.23
MSX1P28360 SEC63P2-201ENST00000503863 1939 ntBASIC7.37□□□□□ -1.23
MSX1P28360 MID1-212ENST00000616003 1926 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSX1P28360 AL353763.2-201ENST00000623489 1903 ntBASIC7.37□□□□□ -1.23
MSX1P28360 Z93929.1-201ENST00000418200 1475 ntBASIC7.36□□□□□ -1.23
MSX1P28360 SOX6-210ENST00000528252 2707 ntAPPRIS ALT2 TSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 OSBPL1A-202ENST00000357041 1869 ntTSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 KCNMB2-201ENST00000358316 2271 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 HAVCR1-205ENST00000523175 1449 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 KNG1-201ENST00000265023 3435 ntAPPRIS ALT1 TSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 AL161725.1-201ENST00000591577 1351 ntTSL 5 BASIC7.36□□□□□ -1.23
MSX1P28360 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 CD274-202ENST00000381577 3644 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 PALLD-206ENST00000505667 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC7.36□□□□□ -1.23
MSX1P28360 AC117529.2-201ENST00000512159 2068 ntBASIC7.36□□□□□ -1.23
MSX1P28360 EHF-201ENST00000257831 3150 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 UBQLN3-201ENST00000311659 2407 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 MTND5P23-201ENST00000430812 1655 ntBASIC7.36□□□□□ -1.23
MSX1P28360 LINC01358-211ENST00000635571 1687 ntTSL 5 BASIC7.36□□□□□ -1.23
MSX1P28360 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 CDH18-203ENST00000502796 2386 ntTSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 Y_RNA.279-201ENST00000364763 95 ntBASIC7.36□□□□□ -1.23
MSX1P28360 FCAR-205ENST00000391723 754 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
MSX1P28360 AC022400.3-201ENST00000399449 3810 ntTSL 5 BASIC7.36□□□□□ -1.23
MSX1P28360 MTCYBP36-201ENST00000404146 440 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC7.36□□□□□ -1.23
MSX1P28360 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC7.36□□□□□ -1.23
MSX1P28360 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC7.36□□□□□ -1.23
MSX1P28360 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC7.36□□□□□ -1.23
MSX1P28360 AL713965.1-201ENST00000421166 230 ntTSL 5 BASIC7.36□□□□□ -1.23
MSX1P28360 AL513185.2-201ENST00000425543 193 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AC004160.2-201ENST00000425837 563 ntTSL 4 BASIC7.36□□□□□ -1.23
MSX1P28360 KRTAP9-11P-201ENST00000431013 525 ntBASIC7.36□□□□□ -1.23
MSX1P28360 AL021707.2-201ENST00000431924 786 ntTSL 3 BASIC7.36□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms