Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SSX2IPQ9Y2D8 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SSX2IPQ9Y2D8 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SSX2IPQ9Y2D8 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SSX2IPQ9Y2D8 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 MTND4P21-201ENST00000453886 1357 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC023490.2-201ENST00000359859 470 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 RNU1-46P-201ENST00000384425 164 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AL713922.1-201ENST00000416477 747 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AL157884.1-201ENST00000424561 454 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 PNKDP1-201ENST00000435914 430 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC022206.1-201ENST00000495947 347 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 SNX18P24-201ENST00000505249 671 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 PRMT5P1-201ENST00000514351 598 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 RN7SKP248-201ENST00000516278 305 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC036111.2-201ENST00000533247 901 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC009268.1-201ENST00000561352 1203 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 MTND2P13-201ENST00000577438 1039 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC067773.1-201ENST00000603284 1094 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC015802.5-201ENST00000607478 399 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AL356490.1-201ENST00000623079 479 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC106858.1-201ENST00000637497 429 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 AC006600.2-201ENST00000624834 2506 ntBASIC6.84□□□□□ -1.31
SSX2IPQ9Y2D8 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
SSX2IPQ9Y2D8 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
SSX2IPQ9Y2D8 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.32
SSX2IPQ9Y2D8 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
SSX2IPQ9Y2D8 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.84□□□□□ -1.32
SSX2IPQ9Y2D8 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.84□□□□□ -1.32
SSX2IPQ9Y2D8 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.84□□□□□ -1.32
SSX2IPQ9Y2D8 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AL157702.1-201ENST00000398764 426 ntBASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 RN7SKP144-201ENST00000411108 279 ntBASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 DNAJA1P5-201ENST00000440278 943 ntBASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 SOCS5P1-201ENST00000440415 949 ntBASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AC008628.1-201ENST00000508663 265 ntBASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AP003080.1-202ENST00000526526 915 ntBASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 CR383656.14-201ENST00000551951 406 ntBASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AC092332.1-201ENST00000563684 829 ntBASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 SETP3-201ENST00000581726 813 ntBASIC6.83□□□□□ -1.32
SSX2IPQ9Y2D8 AC008507.3-201ENST00000585753 472 ntBASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms