Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ANAPC5-208ENST00000535482 2077 ntTSL 2 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 LY86-AS1-201ENST00000429345 1941 ntTSL 2 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 SSX2B-204ENST00000616191 1344 ntAPPRIS P1 TSL 5 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 CACNB2-201ENST00000282343 3524 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 RTN4-206ENST00000394611 4161 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 TAF1A-201ENST00000350027 1966 ntAPPRIS P1 TSL 2 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 MAPK10-301ENST00000641313 2482 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 SMIM12-204ENST00000446026 2817 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 C9orf72-206ENST00000619707 3339 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 FRG2-201ENST00000378763 2084 ntAPPRIS P3 TSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 FRG2B-202ENST00000443774 2094 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 EXOC7P1-201ENST00000509881 2059 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 MSN-201ENST00000360270 3944 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 NVL-202ENST00000340871 2431 ntTSL 2 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC096745.2-201ENST00000627783 1914 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 HNRNPC-211ENST00000554455 1784 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 HYPM-201ENST00000341016 501 ntAPPRIS P1 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 LEMD1-201ENST00000367149 604 ntTSL 3 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 NR1I3-203ENST00000367981 1076 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 NR1I3-206ENST00000367984 1059 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 MIR142-201ENST00000384835 87 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 U8.14-201ENST00000390843 143 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 FCAR-207ENST00000391725 830 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 LEMD1-206ENST00000391936 727 ntTSL 5 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 RNU6-1068P-201ENST00000410958 103 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AL359475.1-201ENST00000414505 292 ntTSL 3 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC133104.1-201ENST00000429100 218 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 CHCHD4P2-201ENST00000431135 420 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AL050402.1-201ENST00000440477 770 ntTSL 3 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC097499.1-201ENST00000444277 208 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC092042.1-201ENST00000457115 509 ntTSL 3 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC079193.1-201ENST00000460497 588 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC087501.2-201ENST00000466869 581 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC104564.1-201ENST00000493028 407 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC108078.3-201ENST00000502633 489 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC024558.1-201ENST00000505008 528 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AF186996.2-201ENST00000508347 907 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 NR1I3-226ENST00000508740 977 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 LINCR-0001-201ENST00000517732 562 ntTSL 4 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AP003108.2-208ENST00000543044 883 ntTSL 3 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 PFDN5-214ENST00000551018 847 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC067735.1-201ENST00000551152 526 ntTSL 2 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC103968.1-201ENST00000557841 573 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC104785.1-201ENST00000603220 588 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 MIAT_exon5_1.1-201ENST00000618919 149 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AP006248.2-201ENST00000623309 592 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC138627.2-201ENST00000624202 601 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 LINC00547-201ENST00000612438 3314 ntTSL 2 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC010200.1-201ENST00000547380 1454 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC108451.1-201ENST00000558208 2520 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 DAZ2-207ENST00000382449 3791 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 GALNTL5-206ENST00000431418 1678 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 ZNF611-204ENST00000543227 4517 ntAPPRIS P1 TSL 4 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 ZKSCAN5-203ENST00000451158 3111 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 PCBD2-204ENST00000512783 5621 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 SLFN12L-202ENST00000361112 2752 ntAPPRIS ALT2 TSL 5 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 DAZ1-202ENST00000405239 4421 ntAPPRIS P5 TSL 1 (best) BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 OR2T10-202ENST00000642090 3519 ntAPPRIS P1 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 SLAMF7-211ENST00000621377 2608 ntTSL 2 BASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 AC015689.2-201ENST00000528172 1738 ntBASIC8.49□□□□□ -1.05
VPS9D1Q9Y2B5 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 CDK1-203ENST00000395284 1913 ntAPPRIS P2 TSL 1 (best) BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 FAM19A1-203ENST00000496687 1917 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 DNAJC5G-204ENST00000406962 1562 ntTSL 5 BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 AGTPBP1-202ENST00000357081 4393 ntTSL 5 BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 HEATR6-203ENST00000585976 3288 ntTSL 5 BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 HEATR6-212ENST00000613428 3287 ntTSL 5 BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 NLK-201ENST00000407008 4047 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 WISP3-204ENST00000368666 2700 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 ZNF610-207ENST00000601151 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 SIPA1L1-211ENST00000555818 7831 ntAPPRIS P3 TSL 1 (best) BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 TMEM169-201ENST00000295658 3342 ntAPPRIS P1 TSL 2 BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 TREML2-201ENST00000483722 3302 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 AL589642.1-201ENST00000430787 2582 ntTSL 2 BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 ASNSP6-201ENST00000592770 1618 ntBASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 PTPN20-205ENST00000395721 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 UNC79-201ENST00000256339 8400 ntAPPRIS P2 TSL 5 BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC8.48□□□□□ -1.05
VPS9D1Q9Y2B5 RNU6-533P-201ENST00000384144 107 ntBASIC8.48□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms