Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC9.65□□□□□ -0.86
IFT140Q96RY7 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
IFT140Q96RY7 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.86
IFT140Q96RY7 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC9.65□□□□□ -0.87
IFT140Q96RY7 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC9.65□□□□□ -0.87
IFT140Q96RY7 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC9.65□□□□□ -0.87
IFT140Q96RY7 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC9.65□□□□□ -0.87
IFT140Q96RY7 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.87
IFT140Q96RY7 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC9.65□□□□□ -0.87
IFT140Q96RY7 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
IFT140Q96RY7 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC9.64□□□□□ -0.87
IFT140Q96RY7 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
IFT140Q96RY7 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
IFT140Q96RY7 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
IFT140Q96RY7 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
IFT140Q96RY7 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC9.64□□□□□ -0.87
IFT140Q96RY7 ZNF733P-202ENST00000444809 1573 ntBASIC9.64□□□□□ -0.87
IFT140Q96RY7 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
IFT140Q96RY7 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
IFT140Q96RY7 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC9.64□□□□□ -0.87
IFT140Q96RY7 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
IFT140Q96RY7 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
IFT140Q96RY7 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
IFT140Q96RY7 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC9.64□□□□□ -0.87
IFT140Q96RY7 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
IFT140Q96RY7 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
IFT140Q96RY7 AC013442.1-201ENST00000397347 228 ntBASIC9.64□□□□□ -0.87
IFT140Q96RY7 AC015983.1-201ENST00000441577 373 ntBASIC9.64□□□□□ -0.87
IFT140Q96RY7 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC9.64□□□□□ -0.87
IFT140Q96RY7 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
IFT140Q96RY7 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC9.64□□□□□ -0.87
IFT140Q96RY7 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
IFT140Q96RY7 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
IFT140Q96RY7 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
IFT140Q96RY7 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 AL023806.3-201ENST00000638502 2704 ntBASIC9.63□□□□□ -0.87
IFT140Q96RY7 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
IFT140Q96RY7 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
IFT140Q96RY7 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
IFT140Q96RY7 ERCC4-201ENST00000311895 6758 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
IFT140Q96RY7 KIAA1217-204ENST00000376454 7381 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
IFT140Q96RY7 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
IFT140Q96RY7 SSX3-202ENST00000376893 800 ntTSL 2 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 DNAJA1P6-201ENST00000437347 354 ntBASIC9.63□□□□□ -0.87
IFT140Q96RY7 AC006335.2-201ENST00000437993 330 ntBASIC9.63□□□□□ -0.87
IFT140Q96RY7 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 IGLV2-34-201ENST00000490007 283 ntBASIC9.63□□□□□ -0.87
IFT140Q96RY7 RN7SL591P-201ENST00000496150 292 ntBASIC9.63□□□□□ -0.87
IFT140Q96RY7 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 PTPRT-205ENST00000373193 12681 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
IFT140Q96RY7 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC9.63□□□□□ -0.87
IFT140Q96RY7 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC9.62□□□□□ -0.87
IFT140Q96RY7 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
IFT140Q96RY7 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
IFT140Q96RY7 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
IFT140Q96RY7 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
IFT140Q96RY7 AL356967.1-201ENST00000406305 431 ntBASIC9.62□□□□□ -0.87
IFT140Q96RY7 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC9.62□□□□□ -0.87
IFT140Q96RY7 AC091390.1-201ENST00000433904 331 ntBASIC9.62□□□□□ -0.87
IFT140Q96RY7 CEACAMP9-201ENST00000442990 513 ntBASIC9.62□□□□□ -0.87
IFT140Q96RY7 AC105233.1-201ENST00000498840 781 ntBASIC9.62□□□□□ -0.87
IFT140Q96RY7 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC9.62□□□□□ -0.87
IFT140Q96RY7 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC9.62□□□□□ -0.87
IFT140Q96RY7 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC9.62□□□□□ -0.87
IFT140Q96RY7 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
IFT140Q96RY7 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
IFT140Q96RY7 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC9.62□□□□□ -0.87
IFT140Q96RY7 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC9.62□□□□□ -0.87
IFT140Q96RY7 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
IFT140Q96RY7 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC9.62□□□□□ -0.87
IFT140Q96RY7 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
IFT140Q96RY7 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.87
IFT140Q96RY7 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
IFT140Q96RY7 RNA5SP87-201ENST00000384155 118 ntBASIC9.61□□□□□ -0.87
IFT140Q96RY7 PRUNEP1-201ENST00000425846 705 ntBASIC9.61□□□□□ -0.87
IFT140Q96RY7 AL360081.1-201ENST00000428299 555 ntBASIC9.61□□□□□ -0.87
IFT140Q96RY7 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
IFT140Q96RY7 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 RPL38P3-201ENST00000484463 213 ntBASIC9.61□□□□□ -0.87
IFT140Q96RY7 PRELID3BP5-201ENST00000508612 460 ntBASIC9.61□□□□□ -0.87
IFT140Q96RY7 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC9.61□□□□□ -0.87
IFT140Q96RY7 AC087783.2-201ENST00000605070 562 ntBASIC9.61□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms