Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC8.34□□□□□ -1.07
MSH6P52701 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
MSH6P52701 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
MSH6P52701 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC8.34□□□□□ -1.07
MSH6P52701 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC8.34□□□□□ -1.07
MSH6P52701 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC8.34□□□□□ -1.07
MSH6P52701 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSH6P52701 CYP4Z2P-201ENST00000423332 1512 ntBASIC8.34□□□□□ -1.07
MSH6P52701 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSH6P52701 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC8.34□□□□□ -1.07
MSH6P52701 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC8.34□□□□□ -1.07
MSH6P52701 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSH6P52701 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
MSH6P52701 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSH6P52701 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC8.34□□□□□ -1.07
MSH6P52701 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
MSH6P52701 MRPL53P1-201ENST00000414323 319 ntBASIC8.34□□□□□ -1.07
MSH6P52701 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC8.34□□□□□ -1.07
MSH6P52701 AL139415.1-201ENST00000424862 352 ntBASIC8.34□□□□□ -1.07
MSH6P52701 AL590762.4-201ENST00000425885 253 ntBASIC8.34□□□□□ -1.07
MSH6P52701 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC8.34□□□□□ -1.07
MSH6P52701 AL022331.1-201ENST00000429025 477 ntBASIC8.34□□□□□ -1.07
MSH6P52701 BZW1P1-201ENST00000454901 1240 ntBASIC8.34□□□□□ -1.07
MSH6P52701 RPL7AP6-201ENST00000477943 801 ntBASIC8.34□□□□□ -1.07
MSH6P52701 AC092824.1-201ENST00000483524 576 ntBASIC8.34□□□□□ -1.07
MSH6P52701 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC8.34□□□□□ -1.07
MSH6P52701 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC8.34□□□□□ -1.07
MSH6P52701 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC8.34□□□□□ -1.07
MSH6P52701 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC8.34□□□□□ -1.07
MSH6P52701 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC8.34□□□□□ -1.07
MSH6P52701 ELOCP28-201ENST00000590044 317 ntBASIC8.34□□□□□ -1.07
MSH6P52701 OR7A11P-201ENST00000597719 953 ntBASIC8.34□□□□□ -1.07
MSH6P52701 AC012557.1-201ENST00000607115 611 ntBASIC8.34□□□□□ -1.07
MSH6P52701 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.08
MSH6P52701 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSH6P52701 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC8.33□□□□□ -1.08
MSH6P52701 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSH6P52701 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC8.33□□□□□ -1.08
MSH6P52701 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
MSH6P52701 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSH6P52701 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSH6P52701 AC025470.1-201ENST00000510053 2032 ntBASIC8.33□□□□□ -1.08
MSH6P52701 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSH6P52701 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
MSH6P52701 UGT2B27P-201ENST00000505092 1620 ntBASIC8.33□□□□□ -1.08
MSH6P52701 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC8.33□□□□□ -1.08
MSH6P52701 AC005332.9-201ENST00000620266 2921 ntBASIC8.33□□□□□ -1.08
MSH6P52701 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
MSH6P52701 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSH6P52701 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSH6P52701 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSH6P52701 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSH6P52701 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSH6P52701 AC005042.1-201ENST00000393397 800 ntBASIC8.33□□□□□ -1.08
MSH6P52701 RN7SKP213-201ENST00000410746 298 ntBASIC8.33□□□□□ -1.08
MSH6P52701 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC8.33□□□□□ -1.08
MSH6P52701 OR7E116P-201ENST00000448529 957 ntBASIC8.33□□□□□ -1.08
MSH6P52701 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC8.33□□□□□ -1.08
MSH6P52701 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC8.33□□□□□ -1.08
MSH6P52701 RPL15P21-201ENST00000495592 567 ntBASIC8.33□□□□□ -1.08
MSH6P52701 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC8.33□□□□□ -1.08
MSH6P52701 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC8.33□□□□□ -1.08
MSH6P52701 AC096996.1-201ENST00000563813 325 ntBASIC8.33□□□□□ -1.08
MSH6P52701 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC8.33□□□□□ -1.08
MSH6P52701 AL139407.1-201ENST00000613826 1175 ntBASIC8.33□□□□□ -1.08
MSH6P52701 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC8.33□□□□□ -1.08
MSH6P52701 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC8.33□□□□□ -1.08
MSH6P52701 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
MSH6P52701 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSH6P52701 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC8.32□□□□□ -1.08
MSH6P52701 AC110373.1-201ENST00000505994 3505 ntBASIC8.32□□□□□ -1.08
MSH6P52701 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC8.32□□□□□ -1.08
MSH6P52701 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC8.32□□□□□ -1.08
MSH6P52701 YES1P1-201ENST00000418510 1628 ntBASIC8.32□□□□□ -1.08
MSH6P52701 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSH6P52701 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
MSH6P52701 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
MSH6P52701 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC8.32□□□□□ -1.08
MSH6P52701 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSH6P52701 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
MSH6P52701 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSH6P52701 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSH6P52701 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
MSH6P52701 LINC02035-201ENST00000610128 5476 ntBASIC8.32□□□□□ -1.08
MSH6P52701 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSH6P52701 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSH6P52701 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSH6P52701 RNA5SP234-201ENST00000363916 119 ntBASIC8.32□□□□□ -1.08
MSH6P52701 AC009804.1-201ENST00000400949 179 ntBASIC8.32□□□□□ -1.08
MSH6P52701 HMGA1P8-201ENST00000414130 321 ntBASIC8.32□□□□□ -1.08
MSH6P52701 RPS12P17-201ENST00000438591 377 ntBASIC8.32□□□□□ -1.08
MSH6P52701 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC8.32□□□□□ -1.08
MSH6P52701 RPSAP50-201ENST00000481955 852 ntBASIC8.32□□□□□ -1.08
MSH6P52701 NPM1P27-201ENST00000502784 830 ntBASIC8.32□□□□□ -1.08
MSH6P52701 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSH6P52701 AC008629.2-201ENST00000503783 483 ntBASIC8.32□□□□□ -1.08
MSH6P52701 SNORA58-201ENST00000505219 137 ntBASIC8.32□□□□□ -1.08
MSH6P52701 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSH6P52701 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC8.32□□□□□ -1.08
MSH6P52701 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC8.32□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms