Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PTCH1-209ENST00000437951 8049 ntTSL 5 BASIC4.06□□□□□ -1.76
PRKDCP78527 CORO2A-201ENST00000343933 5635 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PRKDCP78527 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
PRKDCP78527 RNA5SP387-201ENST00000364226 106 ntBASIC4.06□□□□□ -1.76
PRKDCP78527 SNORA48.7-201ENST00000391302 135 ntBASIC4.06□□□□□ -1.76
PRKDCP78527 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.06□□□□□ -1.76
PRKDCP78527 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.06□□□□□ -1.76
PRKDCP78527 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.06□□□□□ -1.76
PRKDCP78527 MIR5095-201ENST00000578844 88 ntBASIC4.06□□□□□ -1.76
PRKDCP78527 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC4.06□□□□□ -1.76
PRKDCP78527 NRAP-204ENST00000369360 5535 ntTSL 5 BASIC4.06□□□□□ -1.76
PRKDCP78527 FAM199X-202ENST00000493442 7457 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PRKDCP78527 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC4.06□□□□□ -1.76
PRKDCP78527 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC4.06□□□□□ -1.76
PRKDCP78527 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PRKDCP78527 LAMA4-207ENST00000424408 5983 ntAPPRIS P3 TSL 5 BASIC4.06□□□□□ -1.76
PRKDCP78527 TPR-201ENST00000367478 9708 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PRKDCP78527 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC4.06□□□□□ -1.76
PRKDCP78527 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC4.06□□□□□ -1.76
PRKDCP78527 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
PRKDCP78527 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
PRKDCP78527 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
PRKDCP78527 ZRANB2-AS1-202ENST00000450461 553 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
PRKDCP78527 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.06□□□□□ -1.76
PRKDCP78527 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC4.06□□□□□ -1.76
PRKDCP78527 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.06□□□□□ -1.76
PRKDCP78527 BNIP3P5-201ENST00000562290 498 ntBASIC4.06□□□□□ -1.76
PRKDCP78527 AC024255.1-201ENST00000614376 102 ntBASIC4.06□□□□□ -1.76
PRKDCP78527 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC4.05□□□□□ -1.76
PRKDCP78527 AC114776.1-201ENST00000414159 4395 ntTSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 PPIP5K1-206ENST00000381885 5596 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 SORBS2-209ENST00000418609 5529 ntTSL 2 BASIC4.05□□□□□ -1.76
PRKDCP78527 SH3GLB1-205ENST00000616170 6456 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 SYNJ2-207ENST00000638626 7332 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC4.05□□□□□ -1.76
PRKDCP78527 KMT2A-201ENST00000389506 13655 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 AC092692.1-201ENST00000623625 2595 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 SUPT16H-201ENST00000216297 4684 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 SNORA67-201ENST00000384423 137 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 RNU4ATAC2P-201ENST00000408674 126 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 PPP2R2DP1-201ENST00000420526 637 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC4.05□□□□□ -1.76
PRKDCP78527 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.05□□□□□ -1.76
PRKDCP78527 EEF1A1P1-201ENST00000447052 739 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 NPM1P42-201ENST00000560329 862 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.05□□□□□ -1.76
PRKDCP78527 RPL26P30-202ENST00000602923 645 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 LTBP1-201ENST00000402934 4948 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 ACACB-202ENST00000377848 9247 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 BTBD3-215ENST00000618918 4486 ntAPPRIS ALT1 TSL 4 BASIC4.05□□□□□ -1.76
PRKDCP78527 NRP1-201ENST00000265371 5882 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC4.05□□□□□ -1.76
PRKDCP78527 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 CALML4-203ENST00000395465 4155 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 VIL1-201ENST00000248444 6531 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC4.05□□□□□ -1.76
PRKDCP78527 ERG-201ENST00000288319 4919 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 GEMIN5-201ENST00000285873 5397 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 RN7SKP95-201ENST00000362860 303 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 RNA5SP171-201ENST00000391071 115 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 RN7SKP263-201ENST00000411194 309 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 ELOCP19-201ENST00000411919 318 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 AC097721.1-201ENST00000427150 1253 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 snoU13.20-201ENST00000459180 104 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 AC111000.3-201ENST00000508057 576 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC4.05□□□□□ -1.76
PRKDCP78527 PARP1P2-201ENST00000556806 195 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.05□□□□□ -1.76
PRKDCP78527 AC092130.1-201ENST00000565531 531 ntTSL 4 BASIC4.05□□□□□ -1.76
PRKDCP78527 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 AL512782.1-201ENST00000603093 364 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 MLECP1-201ENST00000615893 709 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 SAR1B-201ENST00000402673 6682 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 PLEKHA6-201ENST00000272203 7401 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 AC132825.3-201ENST00000562182 4710 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 RASGRP3-202ENST00000403687 4807 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 ARHGAP20-202ENST00000524756 6180 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 SLC24A4-205ENST00000532405 9950 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 SPTB-204ENST00000389722 10063 ntTSL 2 BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 134.3 ms