Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.74□□□□□ -1.49
SOX3P41225 Y_RNA.710-201ENST00000516975 110 ntBASIC5.74□□□□□ -1.49
SOX3P41225 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.74□□□□□ -1.49
SOX3P41225 TRAV11-201ENST00000539512 339 ntBASIC5.74□□□□□ -1.49
SOX3P41225 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.74□□□□□ -1.49
SOX3P41225 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC5.74□□□□□ -1.49
SOX3P41225 AC007346.1-201ENST00000569208 867 ntBASIC5.74□□□□□ -1.49
SOX3P41225 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC5.74□□□□□ -1.49
SOX3P41225 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX3P41225 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SOX3P41225 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
SOX3P41225 AP001823.1-201ENST00000604056 1003 ntBASIC5.74□□□□□ -1.49
SOX3P41225 AC073389.3-201ENST00000609434 935 ntBASIC5.74□□□□□ -1.49
SOX3P41225 AC092681.3-201ENST00000609463 678 ntBASIC5.74□□□□□ -1.49
SOX3P41225 RFPL4AP6-201ENST00000616792 846 ntBASIC5.74□□□□□ -1.49
SOX3P41225 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX3P41225 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX3P41225 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
SOX3P41225 AP002833.3-201ENST00000625075 2265 ntBASIC5.74□□□□□ -1.49
SOX3P41225 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
SOX3P41225 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SOX3P41225 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SOX3P41225 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
SOX3P41225 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX3P41225 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC5.74□□□□□ -1.49
SOX3P41225 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.74□□□□□ -1.49
SOX3P41225 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC5.74□□□□□ -1.49
SOX3P41225 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SOX3P41225 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX3P41225 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SOX3P41225 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX3P41225 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SOX3P41225 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC5.73□□□□□ -1.49
SOX3P41225 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SOX3P41225 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.73□□□□□ -1.49
SOX3P41225 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX3P41225 AL121768.1-201ENST00000613917 2544 ntBASIC5.73□□□□□ -1.49
SOX3P41225 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SOX3P41225 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SOX3P41225 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX3P41225 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC5.73□□□□□ -1.49
SOX3P41225 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SOX3P41225 RNA5SP433-201ENST00000364491 114 ntBASIC5.73□□□□□ -1.49
SOX3P41225 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX3P41225 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.73□□□□□ -1.49
SOX3P41225 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SOX3P41225 AC092651.1-201ENST00000426110 312 ntBASIC5.73□□□□□ -1.49
SOX3P41225 NAP1L4P3-201ENST00000432820 1147 ntBASIC5.73□□□□□ -1.49
SOX3P41225 AC069154.1-201ENST00000432914 542 ntBASIC5.73□□□□□ -1.49
SOX3P41225 PNKDP1-201ENST00000435914 430 ntBASIC5.73□□□□□ -1.49
SOX3P41225 OR3D1P-201ENST00000438288 955 ntBASIC5.73□□□□□ -1.49
SOX3P41225 OR13K1P-201ENST00000444577 975 ntBASIC5.73□□□□□ -1.49
SOX3P41225 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX3P41225 RPL5P10-201ENST00000445207 894 ntBASIC5.73□□□□□ -1.49
SOX3P41225 AL157385.1-201ENST00000446973 268 ntBASIC5.73□□□□□ -1.49
SOX3P41225 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SOX3P41225 Z83838.1-202ENST00000456225 839 ntBASIC5.73□□□□□ -1.49
SOX3P41225 AC009963.3-201ENST00000458090 486 ntBASIC5.73□□□□□ -1.49
SOX3P41225 snoU13.29-201ENST00000459370 104 ntBASIC5.73□□□□□ -1.49
SOX3P41225 PFN1P8-201ENST00000497012 543 ntBASIC5.73□□□□□ -1.49
SOX3P41225 AC098799.1-201ENST00000504752 800 ntBASIC5.73□□□□□ -1.49
SOX3P41225 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SOX3P41225 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.73□□□□□ -1.49
SOX3P41225 RN7SKP35-201ENST00000517210 151 ntBASIC5.73□□□□□ -1.49
SOX3P41225 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.73□□□□□ -1.49
SOX3P41225 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.73□□□□□ -1.49
SOX3P41225 AC092865.1-201ENST00000544395 1023 ntBASIC5.73□□□□□ -1.49
SOX3P41225 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SOX3P41225 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX3P41225 AC090651.1-201ENST00000567865 634 ntBASIC5.73□□□□□ -1.49
SOX3P41225 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SOX3P41225 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.73□□□□□ -1.49
SOX3P41225 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX3P41225 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.73□□□□□ -1.49
SOX3P41225 DYNLL1P1-201ENST00000595442 269 ntBASIC5.73□□□□□ -1.49
SOX3P41225 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX3P41225 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX3P41225 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX3P41225 FAM27E2-201ENST00000619668 403 ntBASIC5.73□□□□□ -1.49
SOX3P41225 AC025262.3-201ENST00000623666 360 ntBASIC5.73□□□□□ -1.49
SOX3P41225 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX3P41225 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX3P41225 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
SOX3P41225 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC5.73□□□□□ -1.49
SOX3P41225 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
SOX3P41225 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX3P41225 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SOX3P41225 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.73□□□□□ -1.49
SOX3P41225 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX3P41225 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SOX3P41225 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SOX3P41225 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
SOX3P41225 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.73□□□□□ -1.49
SOX3P41225 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
SOX3P41225 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
SOX3P41225 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
SOX3P41225 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC5.72□□□□□ -1.49
SOX3P41225 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms