Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC7.65□□□□□ -1.19
COL18A1P39060 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC7.65□□□□□ -1.19
COL18A1P39060 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
COL18A1P39060 RAD18-201ENST00000264926 5886 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
COL18A1P39060 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.19
COL18A1P39060 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL18A1P39060 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC7.64□□□□□ -1.19
COL18A1P39060 MIR133B-201ENST00000362210 119 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 HMGA1P8-201ENST00000414130 321 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 RPL12P3-201ENST00000440080 396 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC7.64□□□□□ -1.19
COL18A1P39060 RPL7AP6-201ENST00000477943 801 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 ASB8-202ENST00000535055 657 ntTSL 2 BASIC7.64□□□□□ -1.19
COL18A1P39060 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC7.64□□□□□ -1.19
COL18A1P39060 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC7.64□□□□□ -1.19
COL18A1P39060 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC7.64□□□□□ -1.19
COL18A1P39060 AC025574.2-201ENST00000615621 514 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL18A1P39060 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC7.64□□□□□ -1.19
COL18A1P39060 SCYL3-202ENST00000367771 6364 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL18A1P39060 MAPK10-365ENST00000641902 3825 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC7.64□□□□□ -1.19
COL18A1P39060 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC7.64□□□□□ -1.19
COL18A1P39060 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.64□□□□□ -1.19
COL18A1P39060 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL18A1P39060 IMMTP1-201ENST00000435590 2219 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC7.64□□□□□ -1.19
COL18A1P39060 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC7.64□□□□□ -1.19
COL18A1P39060 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL18A1P39060 IGFN1-202ENST00000335211 11810 ntAPPRIS P2 TSL 5 BASIC7.64□□□□□ -1.19
COL18A1P39060 AP000866.6-201ENST00000638898 3579 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL18A1P39060 RNU1-77P-201ENST00000390868 162 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 AL589647.1-201ENST00000402485 466 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 AC108075.1-201ENST00000424692 529 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 RPL35AP28-201ENST00000459730 331 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 RPSAP50-201ENST00000481955 852 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 EIF1P7-201ENST00000487533 337 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC7.64□□□□□ -1.19
COL18A1P39060 AC105420.1-201ENST00000504389 582 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
COL18A1P39060 OR11J2P-201ENST00000555298 907 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC7.64□□□□□ -1.19
COL18A1P39060 RBM22P1-201ENST00000578589 1214 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC7.64□□□□□ -1.19
COL18A1P39060 AC020765.1-201ENST00000604296 328 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 AL121612.2-201ENST00000612261 482 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 MIR6837-201ENST00000620884 64 ntBASIC7.64□□□□□ -1.19
COL18A1P39060 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
COL18A1P39060 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC7.63□□□□□ -1.19
COL18A1P39060 EEF1A1P14-201ENST00000421195 1376 ntBASIC7.63□□□□□ -1.19
COL18A1P39060 AC119674.1-213ENST00000641177 1386 ntBASIC7.63□□□□□ -1.19
COL18A1P39060 MFSD8-219ENST00000641228 2559 ntBASIC7.63□□□□□ -1.19
COL18A1P39060 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL18A1P39060 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL18A1P39060 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL18A1P39060 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
COL18A1P39060 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL18A1P39060 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC7.63□□□□□ -1.19
COL18A1P39060 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC7.63□□□□□ -1.19
COL18A1P39060 CA5A-201ENST00000309893 7567 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL18A1P39060 RNU6ATAC18P-201ENST00000408413 101 ntBASIC7.63□□□□□ -1.19
COL18A1P39060 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC7.63□□□□□ -1.19
COL18A1P39060 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC7.63□□□□□ -1.19
COL18A1P39060 RBMY2KP-201ENST00000418221 992 ntBASIC7.63□□□□□ -1.19
COL18A1P39060 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC7.63□□□□□ -1.19
COL18A1P39060 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC7.63□□□□□ -1.19
COL18A1P39060 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC7.63□□□□□ -1.19
COL18A1P39060 AC079922.1-201ENST00000443291 359 ntBASIC7.63□□□□□ -1.19
COL18A1P39060 AL450996.1-201ENST00000445574 1202 ntBASIC7.63□□□□□ -1.19
COL18A1P39060 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC7.63□□□□□ -1.19
COL18A1P39060 AC090424.1-201ENST00000535243 736 ntBASIC7.63□□□□□ -1.19
COL18A1P39060 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC7.63□□□□□ -1.19
COL18A1P39060 MIR4311-201ENST00000580794 100 ntBASIC7.63□□□□□ -1.19
COL18A1P39060 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC7.63□□□□□ -1.19
COL18A1P39060 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC7.63□□□□□ -1.19
COL18A1P39060 AC126915.2-201ENST00000610957 190 ntBASIC7.63□□□□□ -1.19
COL18A1P39060 AL137246.2-201ENST00000613439 662 ntBASIC7.63□□□□□ -1.19
COL18A1P39060 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC7.63□□□□□ -1.19
COL18A1P39060 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
COL18A1P39060 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL18A1P39060 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC7.63□□□□□ -1.19
COL18A1P39060 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC7.63□□□□□ -1.19
COL18A1P39060 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL18A1P39060 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL18A1P39060 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC7.62□□□□□ -1.19
COL18A1P39060 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC7.62□□□□□ -1.19
COL18A1P39060 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC7.62□□□□□ -1.19
COL18A1P39060 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL18A1P39060 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL18A1P39060 AL390774.1-201ENST00000411924 246 ntBASIC7.62□□□□□ -1.19
COL18A1P39060 NIFKP3-201ENST00000417799 865 ntBASIC7.62□□□□□ -1.19
COL18A1P39060 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC7.62□□□□□ -1.19
COL18A1P39060 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC7.62□□□□□ -1.19
COL18A1P39060 AC026254.2-201ENST00000475295 371 ntBASIC7.62□□□□□ -1.19
COL18A1P39060 AC004825.1-201ENST00000555068 586 ntBASIC7.62□□□□□ -1.19
COL18A1P39060 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC7.62□□□□□ -1.19
COL18A1P39060 MIR132-201ENST00000591554 101 ntBASIC7.62□□□□□ -1.19
COL18A1P39060 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL18A1P39060 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC7.62□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 167.2 ms