Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
SCN4AP35499 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC7.11□□□□□ -1.27
SCN4AP35499 AC245047.2-201ENST00000441060 530 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC7.11□□□□□ -1.27
SCN4AP35499 RANP1-206ENST00000455094 651 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 AL672167.3-201ENST00000465951 960 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 RN7SL808P-201ENST00000496066 299 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC7.11□□□□□ -1.27
SCN4AP35499 OR56A7P-201ENST00000524865 941 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC7.11□□□□□ -1.27
SCN4AP35499 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 ERCC4-201ENST00000311895 6758 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 TRPM3-204ENST00000360823 5966 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 FTO-215ENST00000636491 1676 ntTSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 LARS-212ENST00000510191 3737 ntTSL 2 BASIC7.11□□□□□ -1.27
SCN4AP35499 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
SCN4AP35499 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 ZNF840P-201ENST00000504759 1996 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 AC114786.1-201ENST00000512892 1415 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC7.11□□□□□ -1.27
SCN4AP35499 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 RN7SKP29-201ENST00000410957 272 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC7.11□□□□□ -1.27
SCN4AP35499 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC7.11□□□□□ -1.27
SCN4AP35499 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC7.11□□□□□ -1.27
SCN4AP35499 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC7.11□□□□□ -1.27
SCN4AP35499 AL606490.8-201ENST00000441624 319 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SCN4AP35499 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC7.11□□□□□ -1.27
SCN4AP35499 AC011742.2-201ENST00000443818 352 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 Z80107.2-201ENST00000445127 392 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC7.11□□□□□ -1.27
SCN4AP35499 RN7SL97P-201ENST00000486780 299 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 AC021146.10-201ENST00000515628 706 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 RN7SKP66-201ENST00000516681 231 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC7.11□□□□□ -1.27
SCN4AP35499 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC7.11□□□□□ -1.27
SCN4AP35499 AC104785.1-201ENST00000603220 588 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC7.11□□□□□ -1.27
SCN4AP35499 AL596275.2-208ENST00000641192 594 ntBASIC7.11□□□□□ -1.27
SCN4AP35499 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
SCN4AP35499 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC7.1□□□□□ -1.27
SCN4AP35499 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
SCN4AP35499 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 MAPK10-365ENST00000641902 3825 ntBASIC7.1□□□□□ -1.27
SCN4AP35499 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC7.1□□□□□ -1.27
SCN4AP35499 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 CTNNA1P1-201ENST00000515849 2728 ntBASIC7.1□□□□□ -1.27
SCN4AP35499 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC7.1□□□□□ -1.27
SCN4AP35499 AL109941.1-201ENST00000401925 229 ntBASIC7.1□□□□□ -1.27
SCN4AP35499 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC7.1□□□□□ -1.27
SCN4AP35499 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC7.1□□□□□ -1.27
SCN4AP35499 AL590762.4-201ENST00000425885 253 ntBASIC7.1□□□□□ -1.27
SCN4AP35499 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 AL157777.1-201ENST00000468100 304 ntBASIC7.1□□□□□ -1.27
SCN4AP35499 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 RPL15P21-201ENST00000495592 567 ntBASIC7.1□□□□□ -1.27
SCN4AP35499 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC7.1□□□□□ -1.27
SCN4AP35499 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
SCN4AP35499 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC7.1□□□□□ -1.27
SCN4AP35499 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC7.1□□□□□ -1.27
SCN4AP35499 MIR4436B2-201ENST00000581415 91 ntBASIC7.1□□□□□ -1.27
SCN4AP35499 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC7.1□□□□□ -1.27
SCN4AP35499 MIR4436B1-201ENST00000583272 91 ntBASIC7.1□□□□□ -1.27
SCN4AP35499 AC145423.1-201ENST00000605712 336 ntBASIC7.1□□□□□ -1.27
SCN4AP35499 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
SCN4AP35499 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SCN4AP35499 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC7.1□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms