Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 RPL34P22-201ENST00000468193 318 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL688P-201ENST00000471754 275 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 MYL6P4-201ENST00000477911 453 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 RPL19P13-201ENST00000483119 583 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL28P-201ENST00000488836 298 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 BX293995.1-201ENST00000502880 755 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC106760.2-201ENST00000504159 619 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 IGLC4-201ENST00000517690 248 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC008429.2-201ENST00000523057 864 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC087521.3-202ENST00000526408 743 ntTSL 5 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 PGAM1P8-201ENST00000526979 453 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 H2AFZP4-201ENST00000534148 377 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC087257.2-201ENST00000538759 928 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 BNIP3P1-201ENST00000547295 580 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 PCED1B-AS1-206ENST00000550426 683 ntTSL 5 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC02327-206ENST00000551588 885 ntTSL 5 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 PCED1B-AS1-211ENST00000552990 654 ntTSL 3 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC092133.1-201ENST00000565828 719 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC02178-201ENST00000566876 425 ntTSL 3 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL408P-201ENST00000577207 296 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC005410.2-201ENST00000580270 463 ntTSL 3 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL52P-201ENST00000584271 284 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC011487.2-201ENST00000600193 1228 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC087283.1-201ENST00000604029 1074 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AL133481.2-203ENST00000607558 139 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AL353600.1-201ENST00000608148 251 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC006924.1-201ENST00000610750 559 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 PTCHD3P1-201ENST00000612350 537 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL787P-201ENST00000613000 284 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 XPNPEP3-206ENST00000614001 230 ntTSL 5 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL544P-201ENST00000617232 284 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AC026367.3-201ENST00000619032 590 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL763P-201ENST00000620922 284 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 WDR11-AS1-207ENST00000630905 769 ntTSL 2 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 FAP-203ENST00000443424 2598 ntTSL 2 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 AL512329.1-201ENST00000404600 1592 ntBASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CHKB-CPT1BH3BT56 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 VN2R3P-201ENST00000422626 1412 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 ALB-214ENST00000509063 1911 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 TPM3-201ENST00000271850 1219 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 RNU4-59P-201ENST00000364447 116 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 ATF3-204ENST00000366983 858 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 IGLJ2-201ENST00000390322 175 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC245036.1-201ENST00000391727 309 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 FTH1P26-201ENST00000406512 701 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC005999.1-201ENST00000414409 588 ntTSL 4 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC073136.2-201ENST00000417282 849 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 SMARCA2-211ENST00000417599 980 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 LMLN-AS1-201ENST00000423460 542 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC009784.1-201ENST00000426484 460 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC130472.1-201ENST00000427885 309 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 Z74696.1-201ENST00000428208 1123 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC092098.1-201ENST00000429245 874 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AL049542.1-201ENST00000430231 278 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 ASH2LP1-201ENST00000438037 985 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AL590004.3-201ENST00000450255 443 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 LYPD6B-207ENST00000450639 484 ntAPPRIS ALT2 TSL 3 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 C15orf40-202ENST00000451195 518 ntTSL 3 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC133965.1-201ENST00000452984 354 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL273P-201ENST00000481561 299 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL272P-201ENST00000487762 289 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 PDCL3P4-201ENST00000489621 720 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL792P-201ENST00000496286 305 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 MYL12BP2-201ENST00000503948 512 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC026415.1-201ENST00000505404 471 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC010343.2-201ENST00000510162 224 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 137.7 ms