Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC6.75□□□□□ -1.33
USP39Q53GS9 HMGN1P2-201ENST00000445197 310 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC6.75□□□□□ -1.33
USP39Q53GS9 RPL26P30-201ENST00000453533 435 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC6.75□□□□□ -1.33
USP39Q53GS9 RN7SL221P-201ENST00000466190 281 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC6.75□□□□□ -1.33
USP39Q53GS9 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.75□□□□□ -1.33
USP39Q53GS9 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.75□□□□□ -1.33
USP39Q53GS9 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USP39Q53GS9 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC6.75□□□□□ -1.33
USP39Q53GS9 AC016144.1-201ENST00000548175 1087 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC6.75□□□□□ -1.33
USP39Q53GS9 AC092718.4-201ENST00000566639 716 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC6.75□□□□□ -1.33
USP39Q53GS9 SMIM12P1-201ENST00000603004 274 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 AC023762.1-201ENST00000603280 584 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 AC111186.1-201ENST00000604684 130 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 AL035410.2-201ENST00000604963 864 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 AC073342.3-201ENST00000624211 193 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 AC006453.5-201ENST00000636451 619 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.75□□□□□ -1.33
USP39Q53GS9 TMEM30CP-203ENST00000637814 1035 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC6.75□□□□□ -1.33
USP39Q53GS9 AC087269.2-201ENST00000641764 975 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USP39Q53GS9 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USP39Q53GS9 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.75□□□□□ -1.33
USP39Q53GS9 CCDC125-203ENST00000396499 3615 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USP39Q53GS9 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
USP39Q53GS9 PSMC1P4-201ENST00000515236 1327 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 AC233968.1-201ENST00000611212 1300 ntBASIC6.75□□□□□ -1.33
USP39Q53GS9 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.74□□□□□ -1.33
USP39Q53GS9 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
USP39Q53GS9 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
USP39Q53GS9 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC6.74□□□□□ -1.33
USP39Q53GS9 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.74□□□□□ -1.33
USP39Q53GS9 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 U3.52-201ENST00000384034 216 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 AL359694.1-201ENST00000403247 604 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 PTGES3P2-201ENST00000407942 482 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC6.74□□□□□ -1.33
USP39Q53GS9 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC6.74□□□□□ -1.33
USP39Q53GS9 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 FABP5P1-201ENST00000423401 411 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC6.74□□□□□ -1.33
USP39Q53GS9 AC096992.1-201ENST00000459808 709 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 NDUFA5P5-201ENST00000468361 342 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 AC083806.1-201ENST00000468934 316 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 AC096743.1-201ENST00000485172 319 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 SCG5-207ENST00000497208 949 ntTSL 5 BASIC6.74□□□□□ -1.33
USP39Q53GS9 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 EEF1B2P2-201ENST00000519625 676 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 AP003033.1-201ENST00000527244 415 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.74□□□□□ -1.33
USP39Q53GS9 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.74□□□□□ -1.33
USP39Q53GS9 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 AL445383.1-201ENST00000554689 874 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 YWHAZP1-201ENST00000556286 722 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC6.74□□□□□ -1.33
USP39Q53GS9 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
USP39Q53GS9 RN7SL753P-201ENST00000581238 290 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC6.74□□□□□ -1.33
USP39Q53GS9 AC015911.5-201ENST00000587076 451 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC6.74□□□□□ -1.33
USP39Q53GS9 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC6.74□□□□□ -1.33
USP39Q53GS9 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 AC005156.1-201ENST00000613371 573 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC6.74□□□□□ -1.33
USP39Q53GS9 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC6.74□□□□□ -1.33
USP39Q53GS9 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.74□□□□□ -1.33
USP39Q53GS9 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USP39Q53GS9 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC6.74□□□□□ -1.33
USP39Q53GS9 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC6.74□□□□□ -1.33
USP39Q53GS9 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.74□□□□□ -1.33
USP39Q53GS9 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms