Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC022613.3-201ENST00000560740 1346 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AC112255.1-201ENST00000624070 2493 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AC007342.5-201ENST00000571340 2142 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AL512329.1-201ENST00000404600 1592 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 FANCD2P2-201ENST00000437591 1400 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AP002800.1-201ENST00000624982 2225 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 RNA5SP443-201ENST00000363083 132 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 RNA5SP152-201ENST00000365184 110 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 RN7SKP69-201ENST00000365390 305 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 MIR937-201ENST00000401271 86 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 DHFRP5-201ENST00000406944 564 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 BMS1P13-201ENST00000417301 885 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 CDC42P6-201ENST00000421246 576 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AL034379.1-201ENST00000423216 253 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 MAPRE1P3-201ENST00000435438 796 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 BMS1P10-201ENST00000443754 1120 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AC112484.3-201ENST00000505910 329 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 HSD3BP3-201ENST00000514706 994 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 RNA5SP278-201ENST00000517055 102 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AP002981.1-201ENST00000517692 975 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AP005902.2-201ENST00000518393 307 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 CASC11-203ENST00000519071 791 ntTSL 3 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 OR52K3P-201ENST00000531655 943 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AC004232.2-201ENST00000574245 821 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AL138895.2-201ENST00000603019 178 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AL354696.1-201ENST00000614652 497 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 MIR6721-201ENST00000617181 87 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AC017037.4-201ENST00000624526 826 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 BIN2P1-201ENST00000504996 1530 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 CASC19-238ENST00000641523 1558 ntBASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PDLIM3Q53GG5 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
PDLIM3Q53GG5 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
PDLIM3Q53GG5 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
PDLIM3Q53GG5 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC5.41□□□□□ -1.54
PDLIM3Q53GG5 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.41□□□□□ -1.54
PDLIM3Q53GG5 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.41□□□□□ -1.54
PDLIM3Q53GG5 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.41□□□□□ -1.54
PDLIM3Q53GG5 AC062022.1-201ENST00000451026 1684 ntBASIC5.41□□□□□ -1.54
PDLIM3Q53GG5 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC5.41□□□□□ -1.54
PDLIM3Q53GG5 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
PDLIM3Q53GG5 AL731532.1-201ENST00000623972 4236 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms