Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 AC010401.2-201ENST00000575137 4934 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 RN7SKP160-201ENST00000363804 340 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 TPT1-204ENST00000379060 764 ntTSL 5 BASIC7.95□□□□□ -1.14
HOXC9P31274 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC7.95□□□□□ -1.14
HOXC9P31274 RN7SKP29-201ENST00000410957 272 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC7.95□□□□□ -1.14
HOXC9P31274 AK4P4-201ENST00000419465 646 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 RPS17P15-201ENST00000475609 349 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 RN7SL466P-201ENST00000497546 295 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 OR7E158P-201ENST00000524483 910 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 AP004607.6-201ENST00000525033 1202 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC7.95□□□□□ -1.14
HOXC9P31274 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC7.95□□□□□ -1.14
HOXC9P31274 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC7.95□□□□□ -1.14
HOXC9P31274 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 MIR4443-201ENST00000585052 53 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 FO393422.1-201ENST00000603908 708 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC7.95□□□□□ -1.14
HOXC9P31274 uc_338.26-201ENST00000612659 160 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 CDY5P-201ENST00000411487 1580 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 CDY9P-201ENST00000451397 1580 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC7.95□□□□□ -1.14
HOXC9P31274 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC7.95□□□□□ -1.14
HOXC9P31274 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC7.95□□□□□ -1.14
HOXC9P31274 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC7.95□□□□□ -1.14
HOXC9P31274 AC092724.1-201ENST00000624623 3397 ntBASIC7.95□□□□□ -1.14
HOXC9P31274 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC7.95□□□□□ -1.14
HOXC9P31274 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 XIST-206ENST00000434839 2865 ntTSL 5 BASIC7.95□□□□□ -1.14
HOXC9P31274 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC7.95□□□□□ -1.14
HOXC9P31274 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC7.95□□□□□ -1.14
HOXC9P31274 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HOXC9P31274 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
HOXC9P31274 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC7.94□□□□□ -1.14
HOXC9P31274 AC016583.1-201ENST00000624221 2431 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
HOXC9P31274 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
HOXC9P31274 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC7.94□□□□□ -1.14
HOXC9P31274 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
HOXC9P31274 ADH4-209ENST00000508393 2151 ntTSL 2 BASIC7.94□□□□□ -1.14
HOXC9P31274 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC7.94□□□□□ -1.14
HOXC9P31274 NBPF8-201ENST00000583271 5330 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC7.94□□□□□ -1.14
HOXC9P31274 CR1-204ENST00000367052 7469 ntTSL 5 BASIC7.94□□□□□ -1.14
HOXC9P31274 CR1-205ENST00000367053 7469 ntTSL 5 BASIC7.94□□□□□ -1.14
HOXC9P31274 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
HOXC9P31274 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
HOXC9P31274 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
HOXC9P31274 RPS4XP5-201ENST00000419038 768 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC7.94□□□□□ -1.14
HOXC9P31274 BRWD1P3-201ENST00000428816 390 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC7.94□□□□□ -1.14
HOXC9P31274 AC008945.1-201ENST00000505144 499 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 GAPDHP71-201ENST00000511530 1003 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC7.94□□□□□ -1.14
HOXC9P31274 AC051619.2-201ENST00000559063 397 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC7.94□□□□□ -1.14
HOXC9P31274 MIR4505-201ENST00000582238 73 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 OR7E18P-201ENST00000592589 702 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 AP000864.1-201ENST00000609424 650 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC7.94□□□□□ -1.14
HOXC9P31274 AC092821.2-201ENST00000545710 2042 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
HOXC9P31274 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
HOXC9P31274 AC005831.1-201ENST00000624384 1697 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 CCNT2P1-201ENST00000423082 1315 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC7.94□□□□□ -1.14
HOXC9P31274 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC7.94□□□□□ -1.14
HOXC9P31274 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC7.94□□□□□ -1.14
HOXC9P31274 LINC01616-201ENST00000561816 2280 ntBASIC7.94□□□□□ -1.14
HOXC9P31274 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
HOXC9P31274 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC7.93□□□□□ -1.14
HOXC9P31274 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
HOXC9P31274 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
HOXC9P31274 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
HOXC9P31274 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC7.93□□□□□ -1.14
HOXC9P31274 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC7.93□□□□□ -1.14
HOXC9P31274 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
HOXC9P31274 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
HOXC9P31274 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC7.93□□□□□ -1.14
HOXC9P31274 RNA5SP333-201ENST00000363466 118 ntBASIC7.93□□□□□ -1.14
HOXC9P31274 RNA5SP334-201ENST00000364825 118 ntBASIC7.93□□□□□ -1.14
HOXC9P31274 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
HOXC9P31274 AL596448.1-201ENST00000415024 392 ntBASIC7.93□□□□□ -1.14
HOXC9P31274 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC7.93□□□□□ -1.14
HOXC9P31274 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC7.93□□□□□ -1.14
HOXC9P31274 EIF4A1P6-201ENST00000448133 1210 ntBASIC7.93□□□□□ -1.14
HOXC9P31274 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC7.93□□□□□ -1.14
HOXC9P31274 AC008638.1-201ENST00000506035 866 ntBASIC7.93□□□□□ -1.14
HOXC9P31274 AC024451.1-201ENST00000508013 779 ntBASIC7.93□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms