Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CDC42P3-201ENST00000518493 633 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC7.37□□□□□ -1.23
COL5A3P25940 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC7.37□□□□□ -1.23
COL5A3P25940 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC7.37□□□□□ -1.23
COL5A3P25940 AC004890.3-201ENST00000605566 1095 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 CASC19-264ENST00000641912 1184 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL5A3P25940 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC7.37□□□□□ -1.23
COL5A3P25940 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL5A3P25940 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL5A3P25940 DGKK-201ENST00000611977 7407 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL5A3P25940 AC127070.3-201ENST00000503695 3263 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL5A3P25940 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC7.37□□□□□ -1.23
COL5A3P25940 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL5A3P25940 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL5A3P25940 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC7.37□□□□□ -1.23
COL5A3P25940 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC7.36□□□□□ -1.23
COL5A3P25940 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL5A3P25940 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL5A3P25940 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC7.36□□□□□ -1.23
COL5A3P25940 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL5A3P25940 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC7.36□□□□□ -1.23
COL5A3P25940 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC7.36□□□□□ -1.23
COL5A3P25940 RAB28P2-201ENST00000454299 641 ntBASIC7.36□□□□□ -1.23
COL5A3P25940 AL035690.1-201ENST00000490892 383 ntBASIC7.36□□□□□ -1.23
COL5A3P25940 SCARNA6.1-201ENST00000516989 238 ntBASIC7.36□□□□□ -1.23
COL5A3P25940 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC7.36□□□□□ -1.23
COL5A3P25940 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC7.36□□□□□ -1.23
COL5A3P25940 AP002884.5-201ENST00000595053 1132 ntBASIC7.36□□□□□ -1.23
COL5A3P25940 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL5A3P25940 AC119674.1-213ENST00000641177 1386 ntBASIC7.36□□□□□ -1.23
COL5A3P25940 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC7.36□□□□□ -1.23
COL5A3P25940 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL5A3P25940 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL5A3P25940 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.36□□□□□ -1.23
COL5A3P25940 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL5A3P25940 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC7.36□□□□□ -1.23
COL5A3P25940 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL5A3P25940 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL5A3P25940 U8.4-201ENST00000363626 134 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC7.35□□□□□ -1.23
COL5A3P25940 AC005297.1-201ENST00000444765 862 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC7.35□□□□□ -1.23
COL5A3P25940 AL035090.1-201ENST00000454835 332 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC7.35□□□□□ -1.23
COL5A3P25940 RPS4XP1-201ENST00000482189 787 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC7.35□□□□□ -1.23
COL5A3P25940 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC7.35□□□□□ -1.23
COL5A3P25940 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC7.35□□□□□ -1.23
COL5A3P25940 AC012616.1-201ENST00000600294 197 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 Mico1.1-201ENST00000611698 204 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL5A3P25940 MKI67-202ENST00000368654 12678 ntAPPRIS P3 TSL 2 BASIC7.35□□□□□ -1.23
COL5A3P25940 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL5A3P25940 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL5A3P25940 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL5A3P25940 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL5A3P25940 AL133243.4-201ENST00000623116 3109 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC7.35□□□□□ -1.23
COL5A3P25940 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL5A3P25940 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC7.35□□□□□ -1.23
COL5A3P25940 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL5A3P25940 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL5A3P25940 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL5A3P25940 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC7.35□□□□□ -1.23
COL5A3P25940 OR52B5P-201ENST00000435337 951 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC7.35□□□□□ -1.23
COL5A3P25940 FAR2P1-206ENST00000449736 709 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC7.35□□□□□ -1.23
COL5A3P25940 AL049872.1-201ENST00000556323 322 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC7.35□□□□□ -1.23
COL5A3P25940 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC7.35□□□□□ -1.23
COL5A3P25940 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC7.35□□□□□ -1.23
COL5A3P25940 FKBP1AP1-201ENST00000594588 318 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 AL121612.2-201ENST00000612261 482 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC7.35□□□□□ -1.23
COL5A3P25940 OR52B5P-202ENST00000641118 1110 ntBASIC7.35□□□□□ -1.23
COL5A3P25940 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC7.35□□□□□ -1.23
COL5A3P25940 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL5A3P25940 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC7.35□□□□□ -1.23
COL5A3P25940 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
COL5A3P25940 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL5A3P25940 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC7.35□□□□□ -1.23
COL5A3P25940 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL5A3P25940 AL161912.4-201ENST00000623889 2468 ntBASIC7.34□□□□□ -1.23
COL5A3P25940 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL5A3P25940 AL355377.1-201ENST00000621125 1653 ntBASIC7.34□□□□□ -1.23
COL5A3P25940 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL5A3P25940 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL5A3P25940 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL5A3P25940 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL5A3P25940 AC073429.2-201ENST00000569694 1444 ntBASIC7.34□□□□□ -1.23
COL5A3P25940 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL5A3P25940 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL5A3P25940 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
COL5A3P25940 AL589647.1-201ENST00000402485 466 ntBASIC7.34□□□□□ -1.23
COL5A3P25940 NENFP1-201ENST00000419476 466 ntBASIC7.34□□□□□ -1.23
COL5A3P25940 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC7.34□□□□□ -1.23
COL5A3P25940 AC023141.8-201ENST00000442554 208 ntBASIC7.34□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms