Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 HIGD1AP5-201ENST00000529959 259 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.81□□□□□ -1.48
COL5A1P20908 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.81□□□□□ -1.48
COL5A1P20908 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.81□□□□□ -1.48
COL5A1P20908 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 AC022919.1-201ENST00000624979 626 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 CASC22-202ENST00000628396 802 ntTSL 5 BASIC5.81□□□□□ -1.48
COL5A1P20908 AC022726.2-201ENST00000634673 547 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
COL5A1P20908 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC5.81□□□□□ -1.48
COL5A1P20908 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 AL161901.1-201ENST00000624954 3425 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC5.8□□□□□ -1.48
COL5A1P20908 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 FO393409.1-201ENST00000399325 1372 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 AL359091.1-201ENST00000449048 1734 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC5.8□□□□□ -1.48
COL5A1P20908 SALL4P7-201ENST00000555779 3120 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL5A1P20908 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
COL5A1P20908 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC5.8□□□□□ -1.48
COL5A1P20908 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
COL5A1P20908 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 AL590763.1-201ENST00000398297 1545 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC5.8□□□□□ -1.48
COL5A1P20908 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC5.8□□□□□ -1.48
COL5A1P20908 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC5.8□□□□□ -1.48
COL5A1P20908 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.8□□□□□ -1.48
COL5A1P20908 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
COL5A1P20908 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 RN7SKP160-201ENST00000363804 340 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 RN7SKP128-201ENST00000364270 303 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 SNORA70-201ENST00000384436 135 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 HMGB1P20-201ENST00000402555 677 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 AL596448.1-201ENST00000415024 392 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.8□□□□□ -1.48
COL5A1P20908 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.8□□□□□ -1.48
COL5A1P20908 AC006455.6-201ENST00000426192 893 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 GAPDHP58-201ENST00000438477 1006 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.8□□□□□ -1.48
COL5A1P20908 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.8□□□□□ -1.48
COL5A1P20908 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.8□□□□□ -1.48
COL5A1P20908 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.8□□□□□ -1.48
COL5A1P20908 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC5.8□□□□□ -1.48
COL5A1P20908 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.8□□□□□ -1.48
COL5A1P20908 AL049840.6-201ENST00000604583 345 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 AL445670.1-201ENST00000618889 801 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC5.8□□□□□ -1.48
COL5A1P20908 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 AC009948.3-201ENST00000603415 1798 ntBASIC5.8□□□□□ -1.48
COL5A1P20908 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC5.8□□□□□ -1.48
COL5A1P20908 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL5A1P20908 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A1P20908 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A1P20908 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A1P20908 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A1P20908 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.79□□□□□ -1.48
COL5A1P20908 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A1P20908 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC5.79□□□□□ -1.48
COL5A1P20908 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A1P20908 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
COL5A1P20908 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
COL5A1P20908 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A1P20908 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A1P20908 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
COL5A1P20908 SNORA64.1-201ENST00000362600 132 ntBASIC5.79□□□□□ -1.48
COL5A1P20908 RNA5SP478-201ENST00000364657 115 ntBASIC5.79□□□□□ -1.48
COL5A1P20908 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.79□□□□□ -1.48
COL5A1P20908 AC113412.1-201ENST00000425840 504 ntBASIC5.79□□□□□ -1.48
COL5A1P20908 RPS27P18-201ENST00000431701 247 ntBASIC5.79□□□□□ -1.48
COL5A1P20908 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.79□□□□□ -1.48
COL5A1P20908 AC104164.1-201ENST00000460282 590 ntBASIC5.79□□□□□ -1.48
COL5A1P20908 AC023245.1-201ENST00000468501 517 ntBASIC5.79□□□□□ -1.48
COL5A1P20908 RPS3AP15-201ENST00000483874 781 ntBASIC5.79□□□□□ -1.48
COL5A1P20908 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.79□□□□□ -1.48
COL5A1P20908 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.79□□□□□ -1.48
COL5A1P20908 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.79□□□□□ -1.48
COL5A1P20908 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC5.79□□□□□ -1.48
COL5A1P20908 AC091193.1-201ENST00000604640 448 ntBASIC5.79□□□□□ -1.48
COL5A1P20908 AL021918.2-201ENST00000613415 194 ntBASIC5.79□□□□□ -1.48
COL5A1P20908 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A1P20908 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
COL5A1P20908 AC127024.8-201ENST00000623719 2094 ntBASIC5.79□□□□□ -1.48
COL5A1P20908 AC024587.1-201ENST00000505925 2157 ntBASIC5.79□□□□□ -1.48
COL5A1P20908 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
COL5A1P20908 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
COL5A1P20908 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms