Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 AC092070.2-203ENST00000598377 3644 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC7.81□□□□□ -1.16
COL3A1P02461 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
COL3A1P02461 AL121835.1-201ENST00000404250 354 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 AL596448.1-201ENST00000415024 392 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 AL355994.1-201ENST00000424379 260 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC7.81□□□□□ -1.16
COL3A1P02461 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC7.81□□□□□ -1.16
COL3A1P02461 NXT1P1-201ENST00000458481 316 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
COL3A1P02461 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC7.81□□□□□ -1.16
COL3A1P02461 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC7.81□□□□□ -1.16
COL3A1P02461 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC7.81□□□□□ -1.16
COL3A1P02461 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC7.81□□□□□ -1.16
COL3A1P02461 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC7.81□□□□□ -1.16
COL3A1P02461 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC7.81□□□□□ -1.16
COL3A1P02461 AP000894.4-201ENST00000610185 483 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC7.81□□□□□ -1.16
COL3A1P02461 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC7.81□□□□□ -1.16
COL3A1P02461 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC7.8□□□□□ -1.16
COL3A1P02461 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL3A1P02461 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC7.8□□□□□ -1.16
COL3A1P02461 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
COL3A1P02461 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL3A1P02461 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC7.8□□□□□ -1.16
COL3A1P02461 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.16
COL3A1P02461 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC7.8□□□□□ -1.16
COL3A1P02461 AC092724.1-201ENST00000624623 3397 ntBASIC7.8□□□□□ -1.16
COL3A1P02461 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL3A1P02461 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC7.8□□□□□ -1.16
COL3A1P02461 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC7.8□□□□□ -1.16
COL3A1P02461 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL3A1P02461 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL3A1P02461 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
COL3A1P02461 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL3A1P02461 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL3A1P02461 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL3A1P02461 HMGB1P20-201ENST00000402555 677 ntBASIC7.8□□□□□ -1.16
COL3A1P02461 AL512422.1-201ENST00000407033 553 ntBASIC7.8□□□□□ -1.16
COL3A1P02461 RPS3AP2-201ENST00000407190 754 ntBASIC7.8□□□□□ -1.16
COL3A1P02461 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC7.8□□□□□ -1.16
COL3A1P02461 RPS17P17-201ENST00000419392 409 ntBASIC7.8□□□□□ -1.16
COL3A1P02461 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC7.8□□□□□ -1.16
COL3A1P02461 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC7.8□□□□□ -1.16
COL3A1P02461 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC7.8□□□□□ -1.16
COL3A1P02461 HCG14-201ENST00000444986 413 ntTSL 2 BASIC7.8□□□□□ -1.16
COL3A1P02461 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC7.8□□□□□ -1.16
COL3A1P02461 TRBV5-2-201ENST00000489095 273 ntBASIC7.8□□□□□ -1.16
COL3A1P02461 AC009120.1-201ENST00000493458 473 ntBASIC7.8□□□□□ -1.16
COL3A1P02461 TOMM22P4-201ENST00000511318 336 ntBASIC7.8□□□□□ -1.16
COL3A1P02461 AC139365.2-201ENST00000517972 253 ntBASIC7.8□□□□□ -1.16
COL3A1P02461 AC026790.2-201ENST00000606282 430 ntBASIC7.8□□□□□ -1.16
COL3A1P02461 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC7.8□□□□□ -1.16
COL3A1P02461 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL3A1P02461 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC7.8□□□□□ -1.16
COL3A1P02461 AC106872.5-201ENST00000508856 1416 ntBASIC7.8□□□□□ -1.16
COL3A1P02461 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL3A1P02461 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC7.8□□□□□ -1.16
COL3A1P02461 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL3A1P02461 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL3A1P02461 LINC01963-201ENST00000562038 3148 ntBASIC7.79□□□□□ -1.16
COL3A1P02461 AC007842.1-201ENST00000597336 2039 ntBASIC7.79□□□□□ -1.16
COL3A1P02461 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC7.79□□□□□ -1.16
COL3A1P02461 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC7.79□□□□□ -1.16
COL3A1P02461 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL3A1P02461 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.79□□□□□ -1.16
COL3A1P02461 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL3A1P02461 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL3A1P02461 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
COL3A1P02461 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC7.79□□□□□ -1.16
COL3A1P02461 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL3A1P02461 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
COL3A1P02461 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL3A1P02461 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
COL3A1P02461 RNA5SP435-201ENST00000364044 108 ntBASIC7.79□□□□□ -1.16
COL3A1P02461 RN7SKP69-201ENST00000365390 305 ntBASIC7.79□□□□□ -1.16
COL3A1P02461 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC7.79□□□□□ -1.16
COL3A1P02461 RN7SKP286-201ENST00000410894 299 ntBASIC7.79□□□□□ -1.16
COL3A1P02461 AC126120.1-201ENST00000431082 470 ntBASIC7.79□□□□□ -1.16
COL3A1P02461 USP24P1-201ENST00000433802 779 ntBASIC7.79□□□□□ -1.16
COL3A1P02461 AC073410.1-201ENST00000435125 589 ntBASIC7.79□□□□□ -1.16
COL3A1P02461 TUBB4BP6-201ENST00000437576 479 ntBASIC7.79□□□□□ -1.16
COL3A1P02461 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC7.79□□□□□ -1.16
COL3A1P02461 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC7.79□□□□□ -1.16
COL3A1P02461 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC7.79□□□□□ -1.16
COL3A1P02461 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC7.79□□□□□ -1.16
COL3A1P02461 UGT2A3P7-201ENST00000510485 734 ntBASIC7.79□□□□□ -1.16
COL3A1P02461 GAPDHP71-201ENST00000511530 1003 ntBASIC7.79□□□□□ -1.16
COL3A1P02461 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC7.79□□□□□ -1.16
COL3A1P02461 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC7.79□□□□□ -1.16
COL3A1P02461 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL3A1P02461 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
COL3A1P02461 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL3A1P02461 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC7.79□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms