Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 GALNTL5-206ENST00000431418 1678 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 SPATA19-201ENST00000299140 861 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 IL17F-201ENST00000336123 850 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 C2orf80-201ENST00000341287 1238 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 SGMS1-201ENST00000361543 1096 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 RNA5SP238-201ENST00000365464 120 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 SVBP-201ENST00000372521 658 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 RNY3P14-201ENST00000384309 102 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 MIR197-201ENST00000384976 75 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 TRBV9-201ENST00000390363 390 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 RFKP1-201ENST00000400940 428 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 ZNF603P-201ENST00000405613 487 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 RNU6ATAC25P-201ENST00000408798 117 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 NPM1P11-201ENST00000417106 855 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 CDKN2AIPNLP3-201ENST00000418361 309 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 GTF2IP7-202ENST00000436677 309 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 YWHAZP7-201ENST00000436906 631 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 GTF2IP14-201ENST00000441415 586 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 RAB28P3-201ENST00000448325 597 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 AC006159.1-201ENST00000452009 386 ntTSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 OR52E3P-201ENST00000452083 936 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 UBE2R2-AS1-201ENST00000454429 647 ntTSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 GTF2IP12-201ENST00000456547 356 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 AC084754.1-201ENST00000463466 464 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 SNORA70.23-201ENST00000517218 151 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 MAL2-205ENST00000521048 575 ntTSL 4 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 AP000757.2-201ENST00000531850 557 ntTSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 OR4A21P-201ENST00000532759 944 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 SMCO2-203ENST00000535986 1096 ntAPPRIS P2 TSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 AC244502.2-201ENST00000543361 851 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 AC055736.1-201ENST00000548135 629 ntTSL 3 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 RN7SL192P-201ENST00000584303 299 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 VN1R82P-201ENST00000601481 356 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 AP002906.1-201ENST00000603405 233 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 AC006547.1-211ENST00000609191 828 ntTSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 AL359513.1-201ENST00000614364 557 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 U6atac.1-201ENST00000616025 117 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 uc_338.21-201ENST00000622458 147 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 LIMS1-203ENST00000393310 4392 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 LARP7-201ENST00000324052 2164 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 AC027279.4-201ENST00000624371 2072 ntBASIC7.13□□□□□ -1.27
SSU72Q9NP77 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC7.13□□□□□ -1.27
SSU72Q9NP77 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SSU72Q9NP77 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SSU72Q9NP77 ALKBH8-202ENST00000389568 2491 ntAPPRIS P3 TSL 5 BASIC7.12□□□□□ -1.27
SSU72Q9NP77 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SSU72Q9NP77 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SSU72Q9NP77 PIK3C3-204ENST00000586545 1554 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SSU72Q9NP77 USP48-203ENST00000374732 3037 ntTSL 2 BASIC7.12□□□□□ -1.27
SSU72Q9NP77 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
SSU72Q9NP77 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SSU72Q9NP77 AL391261.1-201ENST00000555712 1479 ntBASIC7.12□□□□□ -1.27
SSU72Q9NP77 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SSU72Q9NP77 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SSU72Q9NP77 AURKA-205ENST00000395911 2145 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
SSU72Q9NP77 ZNF19-210ENST00000567225 2838 ntTSL 3 BASIC7.12□□□□□ -1.27
SSU72Q9NP77 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC7.12□□□□□ -1.27
SSU72Q9NP77 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms