Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS35Q96QK1 AL161912.4-201ENST00000623889 2468 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 LINC01616-201ENST00000561816 2280 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 GTF2IP4-201ENST00000453092 2054 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS35Q96QK1 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 SNORD8-201ENST00000363915 110 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 RN7SKP144-201ENST00000411108 279 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS35Q96QK1 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 EEF1B2P3-201ENST00000447718 678 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 AC093166.3-201ENST00000448785 303 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 PPIA-203ENST00000451562 544 ntTSL 2 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 RN7SL165P-201ENST00000477476 291 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 RPL12P30-201ENST00000488389 499 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 SNX18P24-201ENST00000505249 671 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 AC090958.1-201ENST00000511122 351 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 AP005136.2-201ENST00000583253 1049 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 AC027229.1-201ENST00000583887 253 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 MIR6721-201ENST00000617181 87 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS35Q96QK1 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.18□□□□□ -1.42
VPS35Q96QK1 AC024651.2-201ENST00000562480 2098 ntBASIC6.18□□□□□ -1.42
VPS35Q96QK1 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS35Q96QK1 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS35Q96QK1 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS35Q96QK1 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS35Q96QK1 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS35Q96QK1 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS35Q96QK1 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 ODF3-202ENST00000342593 386 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 RNA5SP232-201ENST00000364144 119 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS35Q96QK1 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
VPS35Q96QK1 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
VPS35Q96QK1 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 AL354893.1-201ENST00000433735 348 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 OR3D1P-201ENST00000438288 955 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 RPL5P7-201ENST00000444235 813 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 AC118758.1-202ENST00000454719 225 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 MARK2P8-201ENST00000476069 952 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 RPL34P33-201ENST00000486062 334 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 AP002453.1-201ENST00000492327 668 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 RN7SL649P-201ENST00000496974 275 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 AC122718.2-201ENST00000505325 591 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 AC107958.1-201ENST00000556576 290 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 AC073389.3-201ENST00000609434 935 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS35Q96QK1 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS35Q96QK1 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.17□□□□□ -1.42
VPS35Q96QK1 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS35Q96QK1 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 AL359976.1-201ENST00000418655 3528 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC140479.2-201ENST00000421567 3130 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms