Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CHMP4CQ96CF2 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CHMP4CQ96CF2 AP000432.2-201ENST00000624164 2048 ntBASIC7.68□□□□□ -1.18
CHMP4CQ96CF2 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 SNORD35A-201ENST00000363389 86 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 OR6K3-202ENST00000368146 996 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 SNORA70H-201ENST00000383910 135 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 SNORA70J-201ENST00000384182 135 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 OR1F12-201ENST00000402365 945 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AC097721.1-201ENST00000427150 1253 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 GTF3AP6-201ENST00000432585 986 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 ZNF736P1Y-201ENST00000440402 1276 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AC236972.4-201ENST00000458091 963 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 SCARNA5-201ENST00000516201 276 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 OR4A41P-201ENST00000533053 928 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 TDGP1-201ENST00000543961 1229 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AC121758.1-202ENST00000556917 658 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AC107993.1-201ENST00000591343 684 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AL683826.1-201ENST00000624104 627 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 DMD-222ENST00000474231 5209 ntTSL 5 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AC005702.3-201ENST00000585345 1447 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 CREM-217ENST00000439705 2306 ntTSL 5 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AC024341.1-201ENST00000526444 1552 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 BX284613.1-201ENST00000452221 1641 ntBASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC7.67□□□□□ -1.18
CHMP4CQ96CF2 AL049634.1-201ENST00000453770 1720 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 MRPS6P2-201ENST00000381143 370 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 RPL5P20-201ENST00000403848 896 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 SNORA11.5-201ENST00000408163 128 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AC096644.3-201ENST00000416788 338 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 VN1R20P-201ENST00000425215 966 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 ZFAND6P1-201ENST00000434138 605 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 MTND4P15-201ENST00000437913 1033 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 SEPT14P12-201ENST00000442280 560 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AL020997.1-201ENST00000446554 349 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 CCNJP2-201ENST00000457810 1163 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 RN7SL649P-201ENST00000496974 275 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AC112484.3-201ENST00000505910 329 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 HMGN1P16-201ENST00000508308 283 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 RNA5SP441-201ENST00000516809 88 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AC135983.3-201ENST00000528049 1226 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AC023310.2-201ENST00000553844 547 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 FAM60CP-201ENST00000591086 664 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AL049840.6-201ENST00000604583 345 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AL589743.6-201ENST00000611025 117 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AL356752.1-201ENST00000615844 593 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 MIR6721-201ENST00000617181 87 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 U1.41-201ENST00000617626 165 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 AC004836.1-201ENST00000623032 634 ntBASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
CHMP4CQ96CF2 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms