Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL4A4P53420 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL4A4P53420 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC6.4□□□□□ -1.39
COL4A4P53420 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL4A4P53420 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL4A4P53420 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL4A4P53420 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL4A4P53420 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
COL4A4P53420 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC6.4□□□□□ -1.39
COL4A4P53420 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL4A4P53420 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL4A4P53420 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL4A4P53420 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
COL4A4P53420 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL4A4P53420 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC6.39□□□□□ -1.39
COL4A4P53420 NME1P1-201ENST00000420914 382 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC6.39□□□□□ -1.39
COL4A4P53420 AL662874.1-201ENST00000426065 230 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 AC009784.1-201ENST00000426484 460 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC6.39□□□□□ -1.39
COL4A4P53420 AC073594.1-201ENST00000462065 364 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 AC115223.1-201ENST00000466377 870 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 AL157777.1-201ENST00000468100 304 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 AL355032.1-201ENST00000472981 438 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 AC004815.1-201ENST00000484185 331 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 RN7SL547P-201ENST00000490793 290 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 GAPDHP71-201ENST00000511530 1003 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC6.39□□□□□ -1.39
COL4A4P53420 RNU6-615P-201ENST00000516065 106 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC6.39□□□□□ -1.39
COL4A4P53420 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC6.39□□□□□ -1.39
COL4A4P53420 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC6.39□□□□□ -1.39
COL4A4P53420 SAMMSON-227ENST00000642114 1199 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
COL4A4P53420 SCN9A-203ENST00000409672 9768 ntAPPRIS P2 TSL 5 BASIC6.39□□□□□ -1.39
COL4A4P53420 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
COL4A4P53420 OPCML-203ENST00000524381 6424 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
COL4A4P53420 AC024587.1-201ENST00000505925 2157 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.39□□□□□ -1.39
COL4A4P53420 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC6.39□□□□□ -1.39
COL4A4P53420 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC6.39□□□□□ -1.39
COL4A4P53420 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 RN7SKP166-201ENST00000410812 305 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 PTCD2P2-201ENST00000415579 1095 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 CUBNP2-201ENST00000443534 1139 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC6.39□□□□□ -1.39
COL4A4P53420 FTH1P2-201ENST00000466086 412 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC6.39□□□□□ -1.39
COL4A4P53420 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC6.39□□□□□ -1.39
COL4A4P53420 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC6.39□□□□□ -1.39
COL4A4P53420 AC119403.2-201ENST00000590960 598 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 AC141002.1-201ENST00000607025 279 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 uc_338.26-201ENST00000612659 160 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 AC005840.5-201ENST00000619166 599 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 MIR193BHG-214ENST00000641765 509 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL4A4P53420 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL4A4P53420 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 AL359091.1-201ENST00000449048 1734 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 AL049634.1-201ENST00000453770 1720 ntBASIC6.39□□□□□ -1.39
COL4A4P53420 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A4P53420 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
COL4A4P53420 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A4P53420 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC6.38□□□□□ -1.39
COL4A4P53420 COL24A1-201ENST00000370571 6825 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A4P53420 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC6.38□□□□□ -1.39
COL4A4P53420 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A4P53420 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC6.38□□□□□ -1.39
COL4A4P53420 AC009948.3-201ENST00000603415 1798 ntBASIC6.38□□□□□ -1.39
COL4A4P53420 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A4P53420 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A4P53420 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC6.38□□□□□ -1.39
COL4A4P53420 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.38□□□□□ -1.39
COL4A4P53420 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A4P53420 AC025470.1-201ENST00000510053 2032 ntBASIC6.38□□□□□ -1.39
COL4A4P53420 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A4P53420 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.38□□□□□ -1.39
COL4A4P53420 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.38□□□□□ -1.39
COL4A4P53420 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC6.38□□□□□ -1.39
COL4A4P53420 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC6.38□□□□□ -1.39
COL4A4P53420 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
COL4A4P53420 Z84478.1-201ENST00000438230 1219 ntBASIC6.38□□□□□ -1.39
COL4A4P53420 CNOT7P2-201ENST00000441051 832 ntBASIC6.38□□□□□ -1.39
COL4A4P53420 AC079922.1-201ENST00000443291 359 ntBASIC6.38□□□□□ -1.39
COL4A4P53420 AC112187.1-201ENST00000455837 479 ntBASIC6.38□□□□□ -1.39
COL4A4P53420 HIGD1AP14-201ENST00000507617 282 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms