Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC7.72□□□□□ -1.17
COL18A1P39060 RNA5SP507-201ENST00000363603 121 ntBASIC7.72□□□□□ -1.17
COL18A1P39060 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC7.72□□□□□ -1.17
COL18A1P39060 AC136624.1-201ENST00000400791 413 ntBASIC7.72□□□□□ -1.17
COL18A1P39060 NENFP1-201ENST00000419476 466 ntBASIC7.72□□□□□ -1.17
COL18A1P39060 OR52B5P-201ENST00000435337 951 ntBASIC7.72□□□□□ -1.17
COL18A1P39060 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC7.72□□□□□ -1.17
COL18A1P39060 H2AFZP6-201ENST00000444403 394 ntBASIC7.72□□□□□ -1.17
COL18A1P39060 AL606490.1-201ENST00000452266 765 ntBASIC7.72□□□□□ -1.17
COL18A1P39060 AL035090.1-201ENST00000454835 332 ntBASIC7.72□□□□□ -1.17
COL18A1P39060 RPEP1-201ENST00000504507 658 ntBASIC7.72□□□□□ -1.17
COL18A1P39060 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC7.72□□□□□ -1.17
COL18A1P39060 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
COL18A1P39060 AL118522.2-201ENST00000616045 615 ntBASIC7.72□□□□□ -1.17
COL18A1P39060 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC7.72□□□□□ -1.17
COL18A1P39060 OR52B5P-202ENST00000641118 1110 ntBASIC7.72□□□□□ -1.17
COL18A1P39060 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL18A1P39060 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL18A1P39060 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL18A1P39060 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL18A1P39060 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL18A1P39060 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL18A1P39060 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC7.72□□□□□ -1.17
COL18A1P39060 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL18A1P39060 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
COL18A1P39060 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC7.72□□□□□ -1.17
COL18A1P39060 NYAP2-202ENST00000636099 5461 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
COL18A1P39060 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
COL18A1P39060 AC005618.1-201ENST00000606901 3148 ntBASIC7.72□□□□□ -1.17
COL18A1P39060 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC7.72□□□□□ -1.17
COL18A1P39060 DNAH9-203ENST00000454412 13452 ntTSL 5 BASIC7.72□□□□□ -1.17
COL18A1P39060 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL18A1P39060 BMPR1A-201ENST00000372037 11255 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL18A1P39060 U8.4-201ENST00000363626 134 ntBASIC7.71□□□□□ -1.17
COL18A1P39060 MRM2-202ENST00000407040 582 ntTSL 3 BASIC7.71□□□□□ -1.17
COL18A1P39060 RN7SKP125-201ENST00000410481 302 ntBASIC7.71□□□□□ -1.17
COL18A1P39060 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC7.71□□□□□ -1.17
COL18A1P39060 PRUNEP1-201ENST00000425846 705 ntBASIC7.71□□□□□ -1.17
COL18A1P39060 AL162739.1-201ENST00000450606 307 ntBASIC7.71□□□□□ -1.17
COL18A1P39060 DDI2-202ENST00000480945 10625 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.17
COL18A1P39060 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC7.71□□□□□ -1.17
COL18A1P39060 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC7.71□□□□□ -1.17
COL18A1P39060 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC7.71□□□□□ -1.17
COL18A1P39060 AL049872.1-201ENST00000556323 322 ntBASIC7.71□□□□□ -1.17
COL18A1P39060 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC7.71□□□□□ -1.17
COL18A1P39060 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC7.71□□□□□ -1.17
COL18A1P39060 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC7.71□□□□□ -1.17
COL18A1P39060 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
COL18A1P39060 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
COL18A1P39060 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
COL18A1P39060 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.17
COL18A1P39060 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
COL18A1P39060 ITPK1-AS1-201ENST00000553639 4701 ntBASIC7.71□□□□□ -1.18
COL18A1P39060 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL18A1P39060 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL18A1P39060 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL18A1P39060 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
COL18A1P39060 AL133243.4-201ENST00000623116 3109 ntBASIC7.71□□□□□ -1.18
COL18A1P39060 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
COL18A1P39060 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
COL18A1P39060 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
COL18A1P39060 AC005042.1-201ENST00000393397 800 ntBASIC7.71□□□□□ -1.18
COL18A1P39060 AP000534.2-201ENST00000412729 568 ntBASIC7.71□□□□□ -1.18
COL18A1P39060 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC7.71□□□□□ -1.18
COL18A1P39060 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC7.71□□□□□ -1.18
COL18A1P39060 RPL23AP40-201ENST00000487630 390 ntBASIC7.71□□□□□ -1.18
COL18A1P39060 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC7.71□□□□□ -1.18
COL18A1P39060 CDC42P3-201ENST00000518493 633 ntBASIC7.71□□□□□ -1.18
COL18A1P39060 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC7.71□□□□□ -1.18
COL18A1P39060 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC7.71□□□□□ -1.18
COL18A1P39060 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC7.71□□□□□ -1.18
COL18A1P39060 AL390318.1-201ENST00000624564 687 ntBASIC7.71□□□□□ -1.18
COL18A1P39060 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL18A1P39060 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC7.71□□□□□ -1.18
COL18A1P39060 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC7.71□□□□□ -1.18
COL18A1P39060 SDK2-201ENST00000392650 10723 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
COL18A1P39060 CDY5P-201ENST00000411487 1580 ntBASIC7.7□□□□□ -1.18
COL18A1P39060 CDY9P-201ENST00000451397 1580 ntBASIC7.7□□□□□ -1.18
COL18A1P39060 MAPK10-304ENST00000641341 3984 ntBASIC7.7□□□□□ -1.18
COL18A1P39060 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
COL18A1P39060 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
COL18A1P39060 CREB3L2-201ENST00000330387 7412 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL18A1P39060 MIR130A-201ENST00000385274 89 ntBASIC7.7□□□□□ -1.18
COL18A1P39060 AL121835.1-201ENST00000404250 354 ntBASIC7.7□□□□□ -1.18
COL18A1P39060 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL18A1P39060 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC7.7□□□□□ -1.18
COL18A1P39060 RPS27P18-201ENST00000431701 247 ntBASIC7.7□□□□□ -1.18
COL18A1P39060 CYCSP6-201ENST00000434498 302 ntBASIC7.7□□□□□ -1.18
COL18A1P39060 AC087672.1-201ENST00000479876 766 ntBASIC7.7□□□□□ -1.18
COL18A1P39060 AL035690.1-201ENST00000490892 383 ntBASIC7.7□□□□□ -1.18
COL18A1P39060 RN7SL808P-201ENST00000496066 299 ntBASIC7.7□□□□□ -1.18
COL18A1P39060 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC7.7□□□□□ -1.18
COL18A1P39060 AC126177.5-201ENST00000549599 178 ntBASIC7.7□□□□□ -1.18
COL18A1P39060 HMGN2P6-201ENST00000551091 273 ntBASIC7.7□□□□□ -1.18
COL18A1P39060 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL18A1P39060 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC7.7□□□□□ -1.18
COL18A1P39060 CCL14-204ENST00000622526 472 ntTSL 3 BASIC7.7□□□□□ -1.18
COL18A1P39060 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
COL18A1P39060 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC7.7□□□□□ -1.18
COL18A1P39060 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC7.7□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms