Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL5A3P25940 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL5A3P25940 TRPM1-202ENST00000397795 5687 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL5A3P25940 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL5A3P25940 AL391261.1-201ENST00000555712 1479 ntBASIC7.39□□□□□ -1.23
COL5A3P25940 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL5A3P25940 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL5A3P25940 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC7.39□□□□□ -1.23
COL5A3P25940 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC7.39□□□□□ -1.23
COL5A3P25940 AL162739.1-201ENST00000450606 307 ntBASIC7.39□□□□□ -1.23
COL5A3P25940 AL022319.1-201ENST00000458183 1167 ntBASIC7.39□□□□□ -1.23
COL5A3P25940 AC115223.1-201ENST00000466377 870 ntBASIC7.39□□□□□ -1.23
COL5A3P25940 SLC25A14P1-201ENST00000502867 901 ntBASIC7.39□□□□□ -1.23
COL5A3P25940 OR5M14P-201ENST00000506803 618 ntBASIC7.39□□□□□ -1.23
COL5A3P25940 AC253576.1-201ENST00000511645 1156 ntBASIC7.39□□□□□ -1.23
COL5A3P25940 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC7.39□□□□□ -1.23
COL5A3P25940 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
COL5A3P25940 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC7.39□□□□□ -1.23
COL5A3P25940 AL355974.3-201ENST00000617383 467 ntBASIC7.39□□□□□ -1.23
COL5A3P25940 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL5A3P25940 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC7.39□□□□□ -1.23
COL5A3P25940 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC7.39□□□□□ -1.23
COL5A3P25940 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL5A3P25940 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL5A3P25940 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC7.39□□□□□ -1.23
COL5A3P25940 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL5A3P25940 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL5A3P25940 AL592429.1-201ENST00000403909 1473 ntBASIC7.39□□□□□ -1.23
COL5A3P25940 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL5A3P25940 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 ABCA4-201ENST00000370225 7309 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 AL645927.1-201ENST00000396783 406 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 RN7SKP216-201ENST00000411050 312 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC7.38□□□□□ -1.23
COL5A3P25940 AC019205.1-201ENST00000421830 730 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 AC005033.1-201ENST00000428904 813 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC7.38□□□□□ -1.23
COL5A3P25940 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC7.38□□□□□ -1.23
COL5A3P25940 AC096996.1-201ENST00000563813 325 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 HCG18-243ENST00000602498 327 ntTSL 3 BASIC7.38□□□□□ -1.23
COL5A3P25940 AC116651.1-201ENST00000609724 556 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 SLC9A6-213ENST00000637234 4691 ntTSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 GBP4-201ENST00000355754 6127 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC7.38□□□□□ -1.23
COL5A3P25940 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 PGR-202ENST00000325455 13748 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 XIST-206ENST00000434839 2865 ntTSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 AP000534.2-201ENST00000412729 568 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC7.38□□□□□ -1.23
COL5A3P25940 GAPDHP58-201ENST00000438477 1006 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC7.38□□□□□ -1.23
COL5A3P25940 OR2AO1P-201ENST00000476497 403 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 AC087672.1-201ENST00000479876 766 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 RPS21P4-201ENST00000487122 248 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC7.38□□□□□ -1.23
COL5A3P25940 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC7.38□□□□□ -1.23
COL5A3P25940 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC7.38□□□□□ -1.23
COL5A3P25940 HMGN2P6-201ENST00000551091 273 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC7.38□□□□□ -1.23
COL5A3P25940 AC007494.1-201ENST00000562293 760 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC7.38□□□□□ -1.23
COL5A3P25940 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC7.38□□□□□ -1.23
COL5A3P25940 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC7.38□□□□□ -1.23
COL5A3P25940 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL5A3P25940 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC7.37□□□□□ -1.23
COL5A3P25940 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL5A3P25940 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL5A3P25940 NUFIP1-201ENST00000379161 3492 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL5A3P25940 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL5A3P25940 LINC01616-201ENST00000561816 2280 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 AC005618.1-201ENST00000606901 3148 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 CDY5P-201ENST00000411487 1580 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 CDY9P-201ENST00000451397 1580 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL5A3P25940 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
COL5A3P25940 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
COL5A3P25940 RNA5SP339-201ENST00000390987 122 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 RN7SKP125-201ENST00000410481 302 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 RPS6P23-201ENST00000413224 722 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 AL606490.1-201ENST00000452266 765 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 CBX1P5-201ENST00000475330 559 ntBASIC7.37□□□□□ -1.23
COL5A3P25940 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC7.37□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms