Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP3Q9Y6I4 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
USP3Q9Y6I4 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
USP3Q9Y6I4 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP3Q9Y6I4 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.71■□□□□ 0.91
USP3Q9Y6I4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 KRT16P5-201ENST00000455284 522 ntBASIC20.71■□□□□ 0.91
USP3Q9Y6I4 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 AP001271.2-201ENST00000624018 1556 ntBASIC20.71■□□□□ 0.91
USP3Q9Y6I4 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP3Q9Y6I4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
USP3Q9Y6I4 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 AP006587.1-201ENST00000534129 1502 ntBASIC20.7■□□□□ 0.9
USP3Q9Y6I4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 AC008550.1-201ENST00000511500 884 ntBASIC20.7■□□□□ 0.9
USP3Q9Y6I4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.7■□□□□ 0.9
USP3Q9Y6I4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
USP3Q9Y6I4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 AC093827.2-201ENST00000512654 315 ntBASIC20.68■□□□□ 0.9
USP3Q9Y6I4 RARRES2P10-201ENST00000564312 460 ntBASIC20.68■□□□□ 0.9
USP3Q9Y6I4 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.68■□□□□ 0.9
USP3Q9Y6I4 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.68■□□□□ 0.9
USP3Q9Y6I4 AC009237.14-201ENST00000609975 1594 ntBASIC20.68■□□□□ 0.9
USP3Q9Y6I4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 PCDHAC2-203ENST00000615316 3011 ntBASIC20.67■□□□□ 0.9
USP3Q9Y6I4 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms