Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHA3Q9Y5H8 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHA3Q9Y5H8 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHA3Q9Y5H8 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHA3Q9Y5H8 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PCDHA3Q9Y5H8 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHA3Q9Y5H8 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 AC005181.1-201ENST00000604782 1256 ntBASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
PCDHA3Q9Y5H8 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 AC004911.1-201ENST00000416316 871 ntBASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 AC022517.1-201ENST00000592429 346 ntBASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHA3Q9Y5H8 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 AC133552.2-202ENST00000575694 574 ntBASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 MIR5787-201ENST00000611784 55 ntBASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHA3Q9Y5H8 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHA3Q9Y5H8 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms