Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 MIR3180-1-201ENST00000580374 94 ntBASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 MIR3180-3-201ENST00000584616 94 ntBASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 TBCB-205ENST00000585746 875 ntTSL 3 BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL17A1Q9UMD9 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 CALM3-202ENST00000391918 702 ntTSL 2 BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 AC004951.3-201ENST00000418645 1148 ntBASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC30.09■■■□□ 2.41
COL17A1Q9UMD9 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC30.08■■■□□ 2.41
COL17A1Q9UMD9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
COL17A1Q9UMD9 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC30.08■■■□□ 2.41
COL17A1Q9UMD9 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC30.08■■■□□ 2.41
COL17A1Q9UMD9 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC30.08■■■□□ 2.41
COL17A1Q9UMD9 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC30.08■■■□□ 2.41
COL17A1Q9UMD9 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC30.08■■■□□ 2.41
COL17A1Q9UMD9 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
COL17A1Q9UMD9 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC30.08■■■□□ 2.41
COL17A1Q9UMD9 AP006587.1-201ENST00000534129 1502 ntBASIC30.08■■■□□ 2.41
COL17A1Q9UMD9 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
COL17A1Q9UMD9 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
COL17A1Q9UMD9 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.41
COL17A1Q9UMD9 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 TSPY17P-201ENST00000450329 467 ntBASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC30.07■■■□□ 2.4
COL17A1Q9UMD9 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 MIR2861-201ENST00000636310 90 ntBASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 SPDYE15P-201ENST00000424157 909 ntBASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 PTPA-216ENST00000432651 857 ntTSL 2 BASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 IFNL4P1-201ENST00000607083 540 ntBASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
COL17A1Q9UMD9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC30.05■■■□□ 2.4
COL17A1Q9UMD9 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL17A1Q9UMD9 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL17A1Q9UMD9 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL17A1Q9UMD9 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC30.05■■■□□ 2.4
COL17A1Q9UMD9 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL17A1Q9UMD9 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC30.05■■■□□ 2.4
COL17A1Q9UMD9 AC140113.3-201ENST00000605663 199 ntBASIC30.05■■■□□ 2.4
COL17A1Q9UMD9 HLA-A-209ENST00000638375 975 ntBASIC30.05■■■□□ 2.4
COL17A1Q9UMD9 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC30.05■■■□□ 2.4
COL17A1Q9UMD9 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL17A1Q9UMD9 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC30.04■■■□□ 2.4
COL17A1Q9UMD9 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC30.04■■■□□ 2.4
COL17A1Q9UMD9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC30.04■■■□□ 2.4
COL17A1Q9UMD9 AC079781.3-201ENST00000449110 356 ntBASIC30.04■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms