Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS28Q9UK41 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.32■□□□□ 0.84
VPS28Q9UK41 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.32■□□□□ 0.84
VPS28Q9UK41 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.32■□□□□ 0.84
VPS28Q9UK41 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS28Q9UK41 AC124016.1-201ENST00000609552 612 ntBASIC20.32■□□□□ 0.84
VPS28Q9UK41 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS28Q9UK41 AL512408.1-201ENST00000569378 2000 ntBASIC20.32■□□□□ 0.84
VPS28Q9UK41 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS28Q9UK41 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
VPS28Q9UK41 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
VPS28Q9UK41 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS28Q9UK41 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS28Q9UK41 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS28Q9UK41 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS28Q9UK41 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS28Q9UK41 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 UBE2SP1-201ENST00000450587 669 ntBASIC20.31■□□□□ 0.84
VPS28Q9UK41 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS28Q9UK41 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 AP006294.2-201ENST00000641667 209 ntBASIC20.31■□□□□ 0.84
VPS28Q9UK41 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS28Q9UK41 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS28Q9UK41 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS28Q9UK41 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS28Q9UK41 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS28Q9UK41 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS28Q9UK41 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
VPS28Q9UK41 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS28Q9UK41 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS28Q9UK41 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS28Q9UK41 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS28Q9UK41 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS28Q9UK41 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS28Q9UK41 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS28Q9UK41 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
VPS28Q9UK41 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VPS28Q9UK41 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS28Q9UK41 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS28Q9UK41 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS28Q9UK41 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS28Q9UK41 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VPS28Q9UK41 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS28Q9UK41 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS28Q9UK41 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS28Q9UK41 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS28Q9UK41 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS28Q9UK41 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
VPS28Q9UK41 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS28Q9UK41 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS28Q9UK41 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS28Q9UK41 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS28Q9UK41 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS28Q9UK41 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS28Q9UK41 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS28Q9UK41 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS28Q9UK41 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS28Q9UK41 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
VPS28Q9UK41 AC133681.1-201ENST00000465482 601 ntBASIC20.29■□□□□ 0.84
VPS28Q9UK41 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.29■□□□□ 0.84
VPS28Q9UK41 AC093827.2-201ENST00000512654 315 ntBASIC20.29■□□□□ 0.84
VPS28Q9UK41 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS28Q9UK41 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
VPS28Q9UK41 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS28Q9UK41 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
VPS28Q9UK41 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS28Q9UK41 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS28Q9UK41 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS28Q9UK41 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS28Q9UK41 BX119927.1-201ENST00000636596 1552 ntBASIC20.29■□□□□ 0.84
VPS28Q9UK41 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS28Q9UK41 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS28Q9UK41 AIRN-201ENST00000601203 4374 ntBASIC20.28■□□□□ 0.84
VPS28Q9UK41 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS28Q9UK41 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 AC110285.5-201ENST00000611501 352 ntBASIC20.28■□□□□ 0.84
VPS28Q9UK41 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms