Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 AC005829.2-201ENST00000571422 1056 ntBASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC40Q9H9A6 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 AC116562.4-201ENST00000641316 2276 ntBASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC40Q9H9A6 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC40Q9H9A6 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 AC097658.1-201ENST00000475555 843 ntBASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 MYC-209ENST00000641252 345 ntBASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC40Q9H9A6 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.02■□□□□ 0.8
LRRC40Q9H9A6 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms