Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 FAM210CP-201ENST00000445714 574 ntBASIC19.61■□□□□ 0.73
TRIM4Q9C037 AC008550.1-201ENST00000511500 884 ntBASIC19.61■□□□□ 0.73
TRIM4Q9C037 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 HCG11-201ENST00000411553 5696 ntBASIC19.61■□□□□ 0.73
TRIM4Q9C037 AC006128.1-201ENST00000624704 1661 ntBASIC19.61■□□□□ 0.73
TRIM4Q9C037 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TRIM4Q9C037 AP000974.1-201ENST00000623909 2387 ntBASIC19.61■□□□□ 0.73
TRIM4Q9C037 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM4Q9C037 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM4Q9C037 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM4Q9C037 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM4Q9C037 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM4Q9C037 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM4Q9C037 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
TRIM4Q9C037 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM4Q9C037 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.6■□□□□ 0.73
TRIM4Q9C037 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM4Q9C037 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM4Q9C037 AC083880.1-201ENST00000608266 535 ntBASIC19.6■□□□□ 0.73
TRIM4Q9C037 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM4Q9C037 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM4Q9C037 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TRIM4Q9C037 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM4Q9C037 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM4Q9C037 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM4Q9C037 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM4Q9C037 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TRIM4Q9C037 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.59■□□□□ 0.73
TRIM4Q9C037 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TRIM4Q9C037 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 CYP2T1P-201ENST00000432607 1285 ntBASIC19.59■□□□□ 0.73
TRIM4Q9C037 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.59■□□□□ 0.73
TRIM4Q9C037 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.59■□□□□ 0.73
TRIM4Q9C037 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.59■□□□□ 0.73
TRIM4Q9C037 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.59■□□□□ 0.73
TRIM4Q9C037 AC010536.3-201ENST00000620306 533 ntBASIC19.59■□□□□ 0.73
TRIM4Q9C037 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
TRIM4Q9C037 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.59■□□□□ 0.73
TRIM4Q9C037 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 NEFHP1-201ENST00000412845 2629 ntBASIC19.59■□□□□ 0.73
TRIM4Q9C037 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM4Q9C037 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM4Q9C037 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM4Q9C037 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM4Q9C037 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.58■□□□□ 0.73
TRIM4Q9C037 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM4Q9C037 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM4Q9C037 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM4Q9C037 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
TRIM4Q9C037 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.58■□□□□ 0.72
TRIM4Q9C037 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM4Q9C037 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM4Q9C037 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.58■□□□□ 0.72
TRIM4Q9C037 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.58■□□□□ 0.72
TRIM4Q9C037 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.58■□□□□ 0.72
TRIM4Q9C037 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.58■□□□□ 0.72
TRIM4Q9C037 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.58■□□□□ 0.72
TRIM4Q9C037 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM4Q9C037 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM4Q9C037 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM4Q9C037 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
TRIM4Q9C037 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM4Q9C037 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM4Q9C037 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM4Q9C037 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM4Q9C037 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
TRIM4Q9C037 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM4Q9C037 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms