Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.67■■□□□ 1.06
TRAIPQ9BWF2 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRAIPQ9BWF2 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
TRAIPQ9BWF2 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAIPQ9BWF2 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.67■■□□□ 1.06
TRAIPQ9BWF2 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 FP700111.2-201ENST00000619190 1892 ntBASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 AC007225.1-201ENST00000566331 1836 ntBASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAIPQ9BWF2 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAIPQ9BWF2 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
TRAIPQ9BWF2 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
TRAIPQ9BWF2 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAIPQ9BWF2 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAIPQ9BWF2 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAIPQ9BWF2 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAIPQ9BWF2 AC211429.1-201ENST00000415277 523 ntBASIC21.65■■□□□ 1.06
TRAIPQ9BWF2 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAIPQ9BWF2 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.65■■□□□ 1.06
TRAIPQ9BWF2 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
TRAIPQ9BWF2 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
TRAIPQ9BWF2 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.64■■□□□ 1.06
TRAIPQ9BWF2 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.64■■□□□ 1.06
TRAIPQ9BWF2 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 AC073195.1-201ENST00000607241 877 ntBASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAIPQ9BWF2 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 AL355075.4-201ENST00000554988 638 ntBASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 CD177P1-201ENST00000606252 935 ntBASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 AC026471.5-201ENST00000615068 467 ntBASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
TRAIPQ9BWF2 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 LINC01023-201ENST00000606054 436 ntBASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAIPQ9BWF2 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms