Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PAAF1Q9BRP4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PAAF1Q9BRP4 KRT16P1-201ENST00000399124 1418 ntBASIC21.14■□□□□ 0.98
PAAF1Q9BRP4 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.14■□□□□ 0.98
PAAF1Q9BRP4 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.14■□□□□ 0.98
PAAF1Q9BRP4 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 KRT18P16-201ENST00000510337 1294 ntBASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 KRT18P21-201ENST00000515767 1272 ntBASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 AC097493.4-201ENST00000641197 219 ntBASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PAAF1Q9BRP4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 MMP23A-201ENST00000234610 1017 ntBASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 ABBA01031674.1-201ENST00000635145 728 ntBASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 AP005212.1-201ENST00000581547 1997 ntBASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 AC092667.1-201ENST00000434301 2586 ntBASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PAAF1Q9BRP4 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 FAM210CP-201ENST00000445714 574 ntBASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 AC116562.2-201ENST00000507042 360 ntBASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PAAF1Q9BRP4 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 AL390955.1-201ENST00000428694 934 ntBASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PAAF1Q9BRP4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 UNC93B2-201ENST00000285383 730 ntBASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 MESTP1-201ENST00000404287 994 ntBASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 FEM1AP1-201ENST00000431297 1995 ntBASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
PAAF1Q9BRP4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PAAF1Q9BRP4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PAAF1Q9BRP4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PAAF1Q9BRP4 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PAAF1Q9BRP4 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
PAAF1Q9BRP4 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
PAAF1Q9BRP4 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PAAF1Q9BRP4 MIR1238-201ENST00000408483 83 ntBASIC21.09■□□□□ 0.97
PAAF1Q9BRP4 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.09■□□□□ 0.97
PAAF1Q9BRP4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
PAAF1Q9BRP4 TUBB8P6-201ENST00000436895 1288 ntBASIC21.09■□□□□ 0.97
PAAF1Q9BRP4 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms