Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
COL12A1Q99715 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.36■□□□□ 0.37
COL12A1Q99715 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
COL12A1Q99715 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL12A1Q99715 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL12A1Q99715 MFAP1P1-201ENST00000442257 1255 ntBASIC17.36■□□□□ 0.37
COL12A1Q99715 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
COL12A1Q99715 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.36■□□□□ 0.37
COL12A1Q99715 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
COL12A1Q99715 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
COL12A1Q99715 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL12A1Q99715 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
COL12A1Q99715 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.36■□□□□ 0.37
COL12A1Q99715 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL12A1Q99715 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL12A1Q99715 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.36■□□□□ 0.37
COL12A1Q99715 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
COL12A1Q99715 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.36■□□□□ 0.37
COL12A1Q99715 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
COL12A1Q99715 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL12A1Q99715 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.36■□□□□ 0.37
COL12A1Q99715 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
COL12A1Q99715 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL12A1Q99715 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL12A1Q99715 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.35■□□□□ 0.37
COL12A1Q99715 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.35■□□□□ 0.37
COL12A1Q99715 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC17.35■□□□□ 0.37
COL12A1Q99715 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL12A1Q99715 FAAHP1-202ENST00000446499 1238 ntBASIC17.35■□□□□ 0.37
COL12A1Q99715 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.35■□□□□ 0.37
COL12A1Q99715 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.35■□□□□ 0.37
COL12A1Q99715 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.35■□□□□ 0.37
COL12A1Q99715 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL12A1Q99715 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL12A1Q99715 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL12A1Q99715 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL12A1Q99715 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
COL12A1Q99715 PMS2P1-201ENST00000431037 1228 ntBASIC17.35■□□□□ 0.37
COL12A1Q99715 KRT18P38-201ENST00000449496 1282 ntBASIC17.35■□□□□ 0.37
COL12A1Q99715 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL12A1Q99715 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL12A1Q99715 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL12A1Q99715 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL12A1Q99715 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL12A1Q99715 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL12A1Q99715 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.34■□□□□ 0.37
COL12A1Q99715 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL12A1Q99715 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.34■□□□□ 0.37
COL12A1Q99715 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL12A1Q99715 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL12A1Q99715 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
COL12A1Q99715 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL12A1Q99715 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL12A1Q99715 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC17.34■□□□□ 0.37
COL12A1Q99715 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.34■□□□□ 0.37
COL12A1Q99715 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.34■□□□□ 0.37
COL12A1Q99715 SLC25A6P4-201ENST00000586535 553 ntBASIC17.34■□□□□ 0.37
COL12A1Q99715 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL12A1Q99715 AC116562.4-202ENST00000641738 218 ntBASIC17.34■□□□□ 0.37
COL12A1Q99715 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL12A1Q99715 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL12A1Q99715 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL12A1Q99715 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.34■□□□□ 0.37
COL12A1Q99715 SPDYE13P-201ENST00000445314 798 ntBASIC17.34■□□□□ 0.37
COL12A1Q99715 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.34■□□□□ 0.37
COL12A1Q99715 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.34■□□□□ 0.37
COL12A1Q99715 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.34■□□□□ 0.37
COL12A1Q99715 AC117500.6-201ENST00000624871 588 ntBASIC17.34■□□□□ 0.37
COL12A1Q99715 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL12A1Q99715 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL12A1Q99715 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.33■□□□□ 0.37
COL12A1Q99715 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL12A1Q99715 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL12A1Q99715 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
COL12A1Q99715 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL12A1Q99715 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL12A1Q99715 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.33■□□□□ 0.36
COL12A1Q99715 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL12A1Q99715 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL12A1Q99715 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL12A1Q99715 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL12A1Q99715 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL12A1Q99715 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL12A1Q99715 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL12A1Q99715 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL12A1Q99715 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL12A1Q99715 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL12A1Q99715 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
COL12A1Q99715 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL12A1Q99715 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL12A1Q99715 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.32■□□□□ 0.36
COL12A1Q99715 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.32■□□□□ 0.36
COL12A1Q99715 AC008040.2-201ENST00000461049 708 ntBASIC17.32■□□□□ 0.36
COL12A1Q99715 AC120114.3-201ENST00000611923 658 ntBASIC17.32■□□□□ 0.36
COL12A1Q99715 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL12A1Q99715 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL12A1Q99715 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL12A1Q99715 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL12A1Q99715 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL12A1Q99715 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms