Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.66■□□□□ 0.74
VPS13AQ96RL7 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 MIR3180-1-201ENST00000580374 94 ntBASIC19.65■□□□□ 0.74
VPS13AQ96RL7 MIR3180-3-201ENST00000584616 94 ntBASIC19.65■□□□□ 0.74
VPS13AQ96RL7 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 AL441883.1-201ENST00000566170 1045 ntBASIC19.65■□□□□ 0.74
VPS13AQ96RL7 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 AC092119.3-201ENST00000612618 583 ntBASIC19.65■□□□□ 0.74
VPS13AQ96RL7 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.65■□□□□ 0.74
VPS13AQ96RL7 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS13AQ96RL7 RCC2P6-201ENST00000526625 1557 ntBASIC19.64■□□□□ 0.74
VPS13AQ96RL7 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS13AQ96RL7 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS13AQ96RL7 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.64■□□□□ 0.74
VPS13AQ96RL7 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
VPS13AQ96RL7 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS13AQ96RL7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS13AQ96RL7 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS13AQ96RL7 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS13AQ96RL7 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS13AQ96RL7 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS13AQ96RL7 KRT8P36-201ENST00000489121 1440 ntBASIC19.64■□□□□ 0.73
VPS13AQ96RL7 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS13AQ96RL7 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS13AQ96RL7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS13AQ96RL7 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS13AQ96RL7 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
VPS13AQ96RL7 C1QL1P1-201ENST00000568105 661 ntBASIC19.64■□□□□ 0.73
VPS13AQ96RL7 AC104692.2-201ENST00000603054 253 ntBASIC19.64■□□□□ 0.73
VPS13AQ96RL7 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 AL512604.3-201ENST00000569583 964 ntBASIC19.63■□□□□ 0.73
VPS13AQ96RL7 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 NPAP1P7-201ENST00000613027 823 ntBASIC19.63■□□□□ 0.73
VPS13AQ96RL7 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13AQ96RL7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 YBX1P10-201ENST00000444752 975 ntBASIC19.62■□□□□ 0.73
VPS13AQ96RL7 HOMER2P1-201ENST00000455653 964 ntBASIC19.62■□□□□ 0.73
VPS13AQ96RL7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13AQ96RL7 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS13AQ96RL7 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms