Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 AC112907.3-201ENST00000577781 2400 ntBASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 GCSHP5-201ENST00000443090 522 ntBASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 RPPH1-201ENST00000516869 333 ntBASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 FAM197Y4-202ENST00000622692 608 ntBASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.63■□□□□ 0.57
PTCHD1Q96NR3 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.62■□□□□ 0.57
PTCHD1Q96NR3 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 AC239809.2-201ENST00000415381 517 ntBASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 AL359736.2-201ENST00000621992 437 ntBASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.61■□□□□ 0.57
PTCHD1Q96NR3 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 PHGDH-210ENST00000641115 1638 ntBASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD1Q96NR3 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD1Q96NR3 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms