Protein–RNA interactions for Protein: Q93008

USP9X, Probable ubiquitin carboxyl-terminal hydrolase FAF-X, humanhuman

Predicted RBP Predictions only

Length 2,570 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP9XQ93008 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.32■□□□□ 0.36
USP9XQ93008 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.32■□□□□ 0.36
USP9XQ93008 AC104692.2-201ENST00000603054 253 ntBASIC17.32■□□□□ 0.36
USP9XQ93008 AC140113.3-201ENST00000605663 199 ntBASIC17.32■□□□□ 0.36
USP9XQ93008 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
USP9XQ93008 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.31■□□□□ 0.36
USP9XQ93008 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.31■□□□□ 0.36
USP9XQ93008 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP9XQ93008 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.31■□□□□ 0.36
USP9XQ93008 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.31■□□□□ 0.36
USP9XQ93008 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP9XQ93008 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.31■□□□□ 0.36
USP9XQ93008 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
USP9XQ93008 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP9XQ93008 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP9XQ93008 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.31■□□□□ 0.36
USP9XQ93008 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC17.31■□□□□ 0.36
USP9XQ93008 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
USP9XQ93008 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP9XQ93008 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.31■□□□□ 0.36
USP9XQ93008 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.31■□□□□ 0.36
USP9XQ93008 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP9XQ93008 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
USP9XQ93008 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP9XQ93008 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP9XQ93008 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.3■□□□□ 0.36
USP9XQ93008 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
USP9XQ93008 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP9XQ93008 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
USP9XQ93008 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP9XQ93008 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP9XQ93008 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.3■□□□□ 0.36
USP9XQ93008 IFNL4P1-201ENST00000607083 540 ntBASIC17.3■□□□□ 0.36
USP9XQ93008 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.3■□□□□ 0.36
USP9XQ93008 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP9XQ93008 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.3■□□□□ 0.36
USP9XQ93008 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP9XQ93008 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP9XQ93008 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP9XQ93008 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
USP9XQ93008 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP9XQ93008 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
USP9XQ93008 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.3■□□□□ 0.36
USP9XQ93008 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.3■□□□□ 0.36
USP9XQ93008 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.3■□□□□ 0.36
USP9XQ93008 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
USP9XQ93008 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP9XQ93008 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.29■□□□□ 0.36
USP9XQ93008 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP9XQ93008 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.29■□□□□ 0.36
USP9XQ93008 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.29■□□□□ 0.36
USP9XQ93008 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
USP9XQ93008 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
USP9XQ93008 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP9XQ93008 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
USP9XQ93008 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
USP9XQ93008 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP9XQ93008 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP9XQ93008 AC092119.3-201ENST00000612618 583 ntBASIC17.29■□□□□ 0.36
USP9XQ93008 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP9XQ93008 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP9XQ93008 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP9XQ93008 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP9XQ93008 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.28■□□□□ 0.36
USP9XQ93008 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.28■□□□□ 0.36
USP9XQ93008 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
USP9XQ93008 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.28■□□□□ 0.36
USP9XQ93008 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.28■□□□□ 0.36
USP9XQ93008 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP9XQ93008 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.28■□□□□ 0.36
USP9XQ93008 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP9XQ93008 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.28■□□□□ 0.36
USP9XQ93008 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP9XQ93008 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.28■□□□□ 0.36
USP9XQ93008 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP9XQ93008 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP9XQ93008 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP9XQ93008 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.28■□□□□ 0.36
USP9XQ93008 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP9XQ93008 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.28■□□□□ 0.36
USP9XQ93008 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP9XQ93008 AC011298.2-201ENST00000617989 482 ntBASIC17.28■□□□□ 0.36
USP9XQ93008 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.28■□□□□ 0.36
USP9XQ93008 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
USP9XQ93008 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP9XQ93008 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP9XQ93008 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP9XQ93008 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP9XQ93008 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP9XQ93008 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP9XQ93008 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP9XQ93008 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
USP9XQ93008 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.27■□□□□ 0.36
USP9XQ93008 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.27■□□□□ 0.36
USP9XQ93008 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP9XQ93008 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.27■□□□□ 0.35
USP9XQ93008 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP9XQ93008 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP9XQ93008 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.27■□□□□ 0.35
USP9XQ93008 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms