Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 HYMAI.1-201ENST00000620949 238 ntBASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
SMC1BQ8NDV3 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 AC117500.6-201ENST00000624871 588 ntBASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SMC1BQ8NDV3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.35
SMC1BQ8NDV3 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SMC1BQ8NDV3 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
SMC1BQ8NDV3 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
SMC1BQ8NDV3 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
SMC1BQ8NDV3 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
SMC1BQ8NDV3 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
SMC1BQ8NDV3 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
SMC1BQ8NDV3 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
SMC1BQ8NDV3 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
SMC1BQ8NDV3 AL031008.1-201ENST00000619963 541 ntBASIC23.5■■□□□ 1.35
SMC1BQ8NDV3 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC23.5■■□□□ 1.35
SMC1BQ8NDV3 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 AP000523.1-201ENST00000398242 1049 ntBASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 AL160237.2-201ENST00000556165 472 ntBASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 IFNL4P1-201ENST00000607083 540 ntBASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SMC1BQ8NDV3 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 AC104692.2-201ENST00000603054 253 ntBASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 KRT8P36-201ENST00000489121 1440 ntBASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
SMC1BQ8NDV3 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 STARP1-201ENST00000397973 869 ntBASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 KRT18P13-201ENST00000400056 1290 ntBASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 TBCB-205ENST00000585746 875 ntTSL 3 BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
SMC1BQ8NDV3 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms