Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 AP002982.1-201ENST00000492365 877 ntBASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 KRT18P16-201ENST00000510337 1294 ntBASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 C1QL1P1-201ENST00000568105 661 ntBASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 AC073195.1-201ENST00000607241 877 ntBASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 LINC01006-201ENST00000333319 2292 ntBASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC22.01■■□□□ 1.11
CCDC60Q8IWA6 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC60Q8IWA6 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC60Q8IWA6 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC60Q8IWA6 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC60Q8IWA6 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
CCDC60Q8IWA6 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC22■■□□□ 1.11
CCDC60Q8IWA6 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC22■■□□□ 1.11
CCDC60Q8IWA6 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC22■■□□□ 1.11
CCDC60Q8IWA6 AL355075.4-201ENST00000554988 638 ntBASIC22■■□□□ 1.11
CCDC60Q8IWA6 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC60Q8IWA6 AC026471.5-201ENST00000615068 467 ntBASIC22■■□□□ 1.11
CCDC60Q8IWA6 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC60Q8IWA6 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC22■■□□□ 1.11
CCDC60Q8IWA6 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC60Q8IWA6 SRI-203ENST00000419179 1307 ntTSL 2 BASIC22■■□□□ 1.11
CCDC60Q8IWA6 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 NIFKP9-201ENST00000419265 221 ntBASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC60Q8IWA6 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 AP003071.4-201ENST00000562276 1284 ntBASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC60Q8IWA6 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 BX088651.1-201ENST00000540551 451 ntBASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC60Q8IWA6 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
CCDC60Q8IWA6 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
CCDC60Q8IWA6 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC60Q8IWA6 AC099778.1-201ENST00000568593 1911 ntBASIC21.96■■□□□ 1.11
CCDC60Q8IWA6 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms