Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 AC006557.6-201ENST00000623071 864 ntBASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 AL691432.2-201ENST00000607222 2038 ntBASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM40Q6P9F5 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 RNA5SP413-201ENST00000516373 109 ntBASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM40Q6P9F5 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 KRT18P6-201ENST00000555540 1265 ntBASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 AC007952.6-201ENST00000573168 2673 ntBASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 AC003957.1-201ENST00000625108 2673 ntBASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
TRIM40Q6P9F5 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms