Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TFP1-202ENST00000475455 1573 ntBASIC21.36■■□□□ 1.01
KRT39Q6A163 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
KRT39Q6A163 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
KRT39Q6A163 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
KRT39Q6A163 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.35■■□□□ 1.01
KRT39Q6A163 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.35■■□□□ 1.01
KRT39Q6A163 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
KRT39Q6A163 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
KRT39Q6A163 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
KRT39Q6A163 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
KRT39Q6A163 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.35■■□□□ 1.01
KRT39Q6A163 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
KRT39Q6A163 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
KRT39Q6A163 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
KRT39Q6A163 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.35■■□□□ 1.01
KRT39Q6A163 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
KRT39Q6A163 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
KRT39Q6A163 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
KRT39Q6A163 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
KRT39Q6A163 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
KRT39Q6A163 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.35■■□□□ 1.01
KRT39Q6A163 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.35■■□□□ 1.01
KRT39Q6A163 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
KRT39Q6A163 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.34■■□□□ 1.01
KRT39Q6A163 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
KRT39Q6A163 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
KRT39Q6A163 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.34■■□□□ 1.01
KRT39Q6A163 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.34■■□□□ 1.01
KRT39Q6A163 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
KRT39Q6A163 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
KRT39Q6A163 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
KRT39Q6A163 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
KRT39Q6A163 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.34■■□□□ 1.01
KRT39Q6A163 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
KRT39Q6A163 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
KRT39Q6A163 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
KRT39Q6A163 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.34■■□□□ 1.01
KRT39Q6A163 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
KRT39Q6A163 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
KRT39Q6A163 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
KRT39Q6A163 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
KRT39Q6A163 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
KRT39Q6A163 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT39Q6A163 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT39Q6A163 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT39Q6A163 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.33■■□□□ 1.01
KRT39Q6A163 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT39Q6A163 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.33■■□□□ 1.01
KRT39Q6A163 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT39Q6A163 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT39Q6A163 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT39Q6A163 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT39Q6A163 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.33■■□□□ 1.01
KRT39Q6A163 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.33■■□□□ 1.01
KRT39Q6A163 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.33■■□□□ 1.01
KRT39Q6A163 AL121906.2-201ENST00000621597 723 ntBASIC21.33■■□□□ 1.01
KRT39Q6A163 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
KRT39Q6A163 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
KRT39Q6A163 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
KRT39Q6A163 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.33■■□□□ 1
KRT39Q6A163 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
KRT39Q6A163 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.33■■□□□ 1
KRT39Q6A163 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
KRT39Q6A163 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
KRT39Q6A163 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.32■■□□□ 1
KRT39Q6A163 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
KRT39Q6A163 AC008403.3-201ENST00000598924 454 ntBASIC21.32■■□□□ 1
KRT39Q6A163 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.32■■□□□ 1
KRT39Q6A163 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT39Q6A163 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
KRT39Q6A163 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.31■■□□□ 1
KRT39Q6A163 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
KRT39Q6A163 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.31■■□□□ 1
KRT39Q6A163 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.31■■□□□ 1
KRT39Q6A163 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT39Q6A163 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT39Q6A163 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.31■■□□□ 1
KRT39Q6A163 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.31■■□□□ 1
KRT39Q6A163 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.31■■□□□ 1
KRT39Q6A163 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.31■■□□□ 1
KRT39Q6A163 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.31■■□□□ 1
KRT39Q6A163 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.31■■□□□ 1
KRT39Q6A163 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.31■■□□□ 1
KRT39Q6A163 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.31■■□□□ 1
KRT39Q6A163 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms