Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
VPS53Q5VIR6 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC23.85■■□□□ 1.41
VPS53Q5VIR6 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC23.85■■□□□ 1.41
VPS53Q5VIR6 AC120498.8-201ENST00000614275 531 ntBASIC23.85■■□□□ 1.41
VPS53Q5VIR6 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC23.85■■□□□ 1.41
VPS53Q5VIR6 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
VPS53Q5VIR6 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
VPS53Q5VIR6 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
VPS53Q5VIR6 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
VPS53Q5VIR6 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 MOK-225ENST00000522867 1883 ntTSL 5 BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 POU5F1P3-201ENST00000428824 1078 ntBASIC23.84■■□□□ 1.41
VPS53Q5VIR6 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 ADM-205ENST00000528544 586 ntTSL 2 BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
VPS53Q5VIR6 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS53Q5VIR6 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS53Q5VIR6 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS53Q5VIR6 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS53Q5VIR6 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS53Q5VIR6 ABHD17AP1-201ENST00000358206 933 ntBASIC23.83■■□□□ 1.41
VPS53Q5VIR6 RPS2P52-201ENST00000469610 820 ntBASIC23.83■■□□□ 1.41
VPS53Q5VIR6 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC23.83■■□□□ 1.41
VPS53Q5VIR6 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
VPS53Q5VIR6 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS53Q5VIR6 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS53Q5VIR6 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS53Q5VIR6 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
VPS53Q5VIR6 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
VPS53Q5VIR6 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.4
VPS53Q5VIR6 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
VPS53Q5VIR6 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
VPS53Q5VIR6 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC23.83■■□□□ 1.4
VPS53Q5VIR6 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
VPS53Q5VIR6 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 LBX2-AS1-202ENST00000603175 2083 ntBASIC23.82■■□□□ 1.4
VPS53Q5VIR6 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC23.82■■□□□ 1.4
VPS53Q5VIR6 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS53Q5VIR6 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 CD37-204ENST00000535669 1674 ntTSL 2 BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS53Q5VIR6 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 KRT16P6-202ENST00000425692 1426 ntBASIC23.79■■□□□ 1.4
VPS53Q5VIR6 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS53Q5VIR6 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms