Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
CCDC88AQ3V6T2 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC88AQ3V6T2 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC24.31■■□□□ 1.48
CCDC88AQ3V6T2 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC88AQ3V6T2 AC121338.2-201ENST00000622535 1744 ntBASIC24.31■■□□□ 1.48
CCDC88AQ3V6T2 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC24.31■■□□□ 1.48
CCDC88AQ3V6T2 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC88AQ3V6T2 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
CCDC88AQ3V6T2 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
CCDC88AQ3V6T2 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC88AQ3V6T2 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC88AQ3V6T2 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC88AQ3V6T2 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 COPE-203ENST00000351079 907 ntTSL 2 BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 AL445675.2-201ENST00000620291 557 ntBASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC88AQ3V6T2 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 AL121603.2-201ENST00000557373 2117 ntBASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 IPPK-202ENST00000375522 882 ntTSL 3 BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 AC007663.1-201ENST00000438948 1240 ntBASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 H19-201ENST00000411754 1788 ntTSL 5 BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 FAM207BP-201ENST00000447172 505 ntBASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC24.28■■□□□ 1.48
CCDC88AQ3V6T2 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 AC026396.1-201ENST00000419388 421 ntBASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 AL138966.2-201ENST00000621997 464 ntBASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 ERF-202ENST00000440177 2032 ntTSL 2 BASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 PLK5-205ENST00000642079 1969 ntBASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC88AQ3V6T2 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 RNF152P1-201ENST00000397754 604 ntBASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC24.26■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms