Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 AL158047.1-201ENST00000445918 881 ntBASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 AC093827.2-201ENST00000512654 315 ntBASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.3■□□□□ 0.68
PTCHD3Q3KNS1 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 UNC93B4-201ENST00000505679 747 ntBASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 SOX15-203ENST00000570788 1093 ntBASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
PTCHD3Q3KNS1 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 GCSHP5-201ENST00000443090 522 ntBASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
PTCHD3Q3KNS1 AC009237.14-201ENST00000609975 1594 ntBASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 PHGDH-210ENST00000641115 1638 ntBASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.27■□□□□ 0.68
PTCHD3Q3KNS1 AC142381.4-202ENST00000563973 229 ntBASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms