Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
HSPG2P98160 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC12.32□□□□□ -0.44
HSPG2P98160 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 HLA-A-209ENST00000638375 975 ntBASIC12.32□□□□□ -0.44
HSPG2P98160 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
HSPG2P98160 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC12.32□□□□□ -0.44
HSPG2P98160 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC12.32□□□□□ -0.44
HSPG2P98160 AL353719.1-201ENST00000566847 864 ntBASIC12.32□□□□□ -0.44
HSPG2P98160 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC12.32□□□□□ -0.44
HSPG2P98160 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC12.32□□□□□ -0.44
HSPG2P98160 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC12.32□□□□□ -0.44
HSPG2P98160 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC12.32□□□□□ -0.44
HSPG2P98160 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HSPG2P98160 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC12.32□□□□□ -0.44
HSPG2P98160 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HSPG2P98160 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
HSPG2P98160 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HSPG2P98160 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HSPG2P98160 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HSPG2P98160 SLC25A1P1-201ENST00000528351 927 ntBASIC12.31□□□□□ -0.44
HSPG2P98160 AC011298.2-201ENST00000617989 482 ntBASIC12.31□□□□□ -0.44
HSPG2P98160 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC12.31□□□□□ -0.44
HSPG2P98160 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC12.31□□□□□ -0.44
HSPG2P98160 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC12.31□□□□□ -0.44
HSPG2P98160 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HSPG2P98160 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC12.31□□□□□ -0.44
HSPG2P98160 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC12.31□□□□□ -0.44
HSPG2P98160 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC12.31□□□□□ -0.44
HSPG2P98160 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC12.31□□□□□ -0.44
HSPG2P98160 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC12.31□□□□□ -0.44
HSPG2P98160 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
HSPG2P98160 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HSPG2P98160 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC12.31□□□□□ -0.44
HSPG2P98160 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC12.31□□□□□ -0.44
HSPG2P98160 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
HSPG2P98160 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HSPG2P98160 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HSPG2P98160 TSPY19P-201ENST00000418461 509 ntBASIC12.3□□□□□ -0.44
HSPG2P98160 TSPY18P-201ENST00000441642 509 ntBASIC12.3□□□□□ -0.44
HSPG2P98160 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC12.3□□□□□ -0.44
HSPG2P98160 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HSPG2P98160 AL160237.2-201ENST00000556165 472 ntBASIC12.3□□□□□ -0.44
HSPG2P98160 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC12.3□□□□□ -0.44
HSPG2P98160 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC12.3□□□□□ -0.44
HSPG2P98160 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HSPG2P98160 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
HSPG2P98160 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC12.3□□□□□ -0.44
HSPG2P98160 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HSPG2P98160 MRPL3P1-201ENST00000400109 1033 ntBASIC12.3□□□□□ -0.44
HSPG2P98160 ZNF444P1-201ENST00000559497 298 ntBASIC12.3□□□□□ -0.44
HSPG2P98160 AC140113.3-201ENST00000605663 199 ntBASIC12.3□□□□□ -0.44
HSPG2P98160 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC12.3□□□□□ -0.44
HSPG2P98160 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HSPG2P98160 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC12.3□□□□□ -0.44
HSPG2P98160 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HSPG2P98160 AC011484.1-201ENST00000377652 1995 ntBASIC12.3□□□□□ -0.44
HSPG2P98160 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC12.3□□□□□ -0.44
HSPG2P98160 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HSPG2P98160 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
HSPG2P98160 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HSPG2P98160 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC12.3□□□□□ -0.44
HSPG2P98160 AC004870.1-201ENST00000315132 882 ntBASIC12.3□□□□□ -0.44
HSPG2P98160 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HSPG2P98160 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC12.3□□□□□ -0.44
HSPG2P98160 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HSPG2P98160 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC12.29□□□□□ -0.44
HSPG2P98160 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HSPG2P98160 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
HSPG2P98160 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HSPG2P98160 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC12.29□□□□□ -0.44
HSPG2P98160 AC112907.2-201ENST00000448639 330 ntBASIC12.29□□□□□ -0.44
HSPG2P98160 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC12.29□□□□□ -0.44
HSPG2P98160 LINC01311-201ENST00000565162 1445 ntBASIC12.29□□□□□ -0.44
HSPG2P98160 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HSPG2P98160 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
HSPG2P98160 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC12.29□□□□□ -0.44
HSPG2P98160 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HSPG2P98160 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HSPG2P98160 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC12.29□□□□□ -0.44
HSPG2P98160 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC12.29□□□□□ -0.44
HSPG2P98160 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
HSPG2P98160 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HSPG2P98160 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC12.29□□□□□ -0.44
HSPG2P98160 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
HSPG2P98160 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC12.29□□□□□ -0.44
HSPG2P98160 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC12.29□□□□□ -0.44
HSPG2P98160 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HSPG2P98160 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC12.29□□□□□ -0.44
HSPG2P98160 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms