Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
PKNOX1P55347 AC011767.1-201ENST00000617410 1153 ntBASIC19.35■□□□□ 0.69
PKNOX1P55347 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PKNOX1P55347 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
PKNOX1P55347 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PKNOX1P55347 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PKNOX1P55347 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PKNOX1P55347 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.35■□□□□ 0.69
PKNOX1P55347 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PKNOX1P55347 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 TREX1-205ENST00000625293 1783 ntBASIC19.34■□□□□ 0.69
PKNOX1P55347 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
PKNOX1P55347 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.34■□□□□ 0.69
PKNOX1P55347 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PKNOX1P55347 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 CYP2T3P-201ENST00000601990 817 ntBASIC19.34■□□□□ 0.69
PKNOX1P55347 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.34■□□□□ 0.69
PKNOX1P55347 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
PKNOX1P55347 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.34■□□□□ 0.69
PKNOX1P55347 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.34■□□□□ 0.69
PKNOX1P55347 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.34■□□□□ 0.69
PKNOX1P55347 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.34■□□□□ 0.69
PKNOX1P55347 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.34■□□□□ 0.69
PKNOX1P55347 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PKNOX1P55347 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.33■□□□□ 0.69
PKNOX1P55347 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PKNOX1P55347 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.69
PKNOX1P55347 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PKNOX1P55347 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PKNOX1P55347 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
PKNOX1P55347 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PKNOX1P55347 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.33■□□□□ 0.69
PKNOX1P55347 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.33■□□□□ 0.68
PKNOX1P55347 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.33■□□□□ 0.68
PKNOX1P55347 CYP2T1P-201ENST00000432607 1285 ntBASIC19.33■□□□□ 0.68
PKNOX1P55347 AC231657.2-201ENST00000624556 255 ntBASIC19.33■□□□□ 0.68
PKNOX1P55347 AC008694.1-202ENST00000636953 945 ntBASIC19.33■□□□□ 0.68
PKNOX1P55347 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.33■□□□□ 0.68
PKNOX1P55347 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
PKNOX1P55347 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
PKNOX1P55347 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.68
PKNOX1P55347 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PKNOX1P55347 AC093484.2-201ENST00000580996 2166 ntBASIC19.33■□□□□ 0.68
PKNOX1P55347 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PKNOX1P55347 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PKNOX1P55347 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
PKNOX1P55347 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
PKNOX1P55347 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.32■□□□□ 0.68
PKNOX1P55347 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PKNOX1P55347 AC026271.2-201ENST00000428091 497 ntBASIC19.32■□□□□ 0.68
PKNOX1P55347 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.32■□□□□ 0.68
PKNOX1P55347 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
PKNOX1P55347 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.32■□□□□ 0.68
PKNOX1P55347 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PKNOX1P55347 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PKNOX1P55347 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
PKNOX1P55347 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PKNOX1P55347 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PKNOX1P55347 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
PKNOX1P55347 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
PKNOX1P55347 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.31■□□□□ 0.68
PKNOX1P55347 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PKNOX1P55347 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
PKNOX1P55347 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.31■□□□□ 0.68
PKNOX1P55347 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PKNOX1P55347 HLA-G-202ENST00000376815 851 ntBASIC19.31■□□□□ 0.68
PKNOX1P55347 HLA-G-203ENST00000376818 1127 ntBASIC19.31■□□□□ 0.68
PKNOX1P55347 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.31■□□□□ 0.68
PKNOX1P55347 BID-214ENST00000617586 542 ntTSL 5 BASIC19.31■□□□□ 0.68
PKNOX1P55347 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.31■□□□□ 0.68
PKNOX1P55347 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PKNOX1P55347 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PKNOX1P55347 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms