Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
FOXA3P55318 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
FOXA3P55318 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC14.81□□□□□ -0.04
FOXA3P55318 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 BX842568.3-201ENST00000418104 571 ntBASIC14.81□□□□□ -0.04
FOXA3P55318 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA3P55318 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA3P55318 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC14.81□□□□□ -0.04
FOXA3P55318 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
FOXA3P55318 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
FOXA3P55318 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA3P55318 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
FOXA3P55318 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA3P55318 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
FOXA3P55318 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA3P55318 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC14.8□□□□□ -0.04
FOXA3P55318 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC14.8□□□□□ -0.04
FOXA3P55318 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC14.8□□□□□ -0.04
FOXA3P55318 AC245052.3-201ENST00000450182 901 ntBASIC14.8□□□□□ -0.04
FOXA3P55318 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
FOXA3P55318 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA3P55318 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA3P55318 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC14.8□□□□□ -0.04
FOXA3P55318 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
FOXA3P55318 GOLGA2P11-201ENST00000562660 1621 ntBASIC14.8□□□□□ -0.04
FOXA3P55318 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA3P55318 TP73-202ENST00000354437 2140 ntTSL 5 BASIC14.8□□□□□ -0.04
FOXA3P55318 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
FOXA3P55318 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC14.8□□□□□ -0.04
FOXA3P55318 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
FOXA3P55318 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA3P55318 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA3P55318 PODN-203ENST00000395871 2744 ntTSL 5 BASIC14.79□□□□□ -0.04
FOXA3P55318 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
FOXA3P55318 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA3P55318 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA3P55318 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA3P55318 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA3P55318 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA3P55318 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA3P55318 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA3P55318 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC14.79□□□□□ -0.04
FOXA3P55318 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC14.79□□□□□ -0.04
FOXA3P55318 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC14.79□□□□□ -0.04
FOXA3P55318 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC14.79□□□□□ -0.04
FOXA3P55318 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA3P55318 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC14.79□□□□□ -0.04
FOXA3P55318 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA3P55318 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
FOXA3P55318 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC14.79□□□□□ -0.04
FOXA3P55318 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA3P55318 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA3P55318 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 PKD1P1-201ENST00000458669 6805 ntBASIC14.78□□□□□ -0.04
FOXA3P55318 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 MFF-207ENST00000409565 1548 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA3P55318 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
FOXA3P55318 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA3P55318 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC14.78□□□□□ -0.04
FOXA3P55318 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA3P55318 OR2A1-AS1-204ENST00000470435 602 ntBASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms